Aniseed - Gene card

Gene Card

Best human hits

EDC4

Species

P.mammillata

Unique Gene ID

Phmamm.g00000966

Gene Model ID

Phmamm.CG.MTP2014.S23.g00966

Location

S23:359457..373425

Transcript Models and Sequences

Phmamm.CG.MTP2014.S23.g00966.01.t
Phmamm.CG.MTP2014.S23.g00966.02.t
Phmamm.CG.MTP2014.S23.g00966.03.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

29 results

AHC0AAA55YJ06

Plate: Plate_55_J06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
WD40_repeat_dom	ProSiteProfiles	WD40-repeat-containing domain
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
EDC4_WD40	Pfam	Enhancer of mRNA-decapping protein 4, WD40 repeat region
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily
WD40_repeat	SMART	WD40 repeat
WD40_repeat	ProSiteProfiles	WD40 repeat

GOSlim

10 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
membrane	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
nuclear-transcribed mRNA catabolic process	Orthology	biological process

GO (Orthology)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
P-body	Hs	cellular component
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
membrane	Hs	cellular component
deadenylation-independent decapping of nuclear-transcribed mRNA	Hs	biological process
cytoplasmic ribonucleoprotein granule	Hs	cellular component
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	Hs	biological process

GO (Blast)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
P-body	Hs	cellular component	280	1.17e-77
protein binding	Hs	molecular function	280	1.17e-77
nucleus	Hs	cellular component	280	1.17e-77
nucleoplasm	Hs	cellular component	280	1.17e-77
cytoplasm	Hs	cellular component	280	1.17e-77
cytosol	Hs	cellular component	280	1.17e-77
membrane	Hs	cellular component	280	1.17e-77
cytoplasmic ribonucleoprotein granule	Hs	cellular component	280	1.17e-77

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	SUPERFAMILY	molecular function	4.58E-11