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GENE CARD

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Gene Card

Best human hits

CNOT7; CNOT8

Species

P.mammillata

Unique Gene ID

Phmamm.g00000859

Gene Model ID

Phmamm.CG.MTP2014.S20.g00859

Location

S20:304839..307572

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

11 results

AHC0AAA11YL22

Plate: Plate_11_L22

AHC0AAA23YB21

Plate: Plate_23_B21

AHC0AAA53YJ07

Plate: Plate_53_J07

AHC0AAA62YK22

Plate: Plate_62_K22

AHC0AAA149YG08

Plate: Plate_149_G08

AHC0AAA92YL15

Plate: Plate_92_L15

AHC0AAA94YE01

Plate: Plate_94_E01

AHC0AAA167YM11

Plate: Plate_167_M11

AHC0AAA171YI14

Plate: Plate_171_I14

AHC0AAA253YL05

Plate: Plate_253_L05

AHC0AAA92YL13

Plate: Plate_92_L13

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
RNase_CAF1 Pfam Ribonuclease CAF1
RNaseH_sf Gene3D Ribonuclease H superfamily
RNaseH-like_sf SUPERFAMILY Ribonuclease H-like superfamily

GOSlim

43 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
nucleic acid binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
RNA binding Orthology molecular function
signal transducer activity Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
signal transduction Orthology biological process
transcription factor binding Orthology molecular function
positive regulation of cell proliferation Orthology biological process
negative regulation of cell proliferation Orthology biological process
negative regulation of gene expression Orthology biological process
membrane Orthology cellular component
nuclear body Orthology cellular component
nuclear speck Orthology cellular component
hydrolase activity Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
RNA metabolic process Orthology biological process
nuclear-transcribed mRNA catabolic process Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
organic substance metabolic process Orthology biological process
regulation of gene expression Orthology biological process
intracellular part Orthology cellular component
cellular process Orthology biological process
cell surface receptor signaling pathway Orthology biological process
regulation of signal transduction Orthology biological process
regulation of cellular metabolic process Orthology biological process
protein phosphorylation Orthology biological process
immune system process Orthology biological process
defense response Orthology biological process
cytokine-mediated signaling pathway Orthology biological process
negative regulation of signal transduction Orthology biological process
innate immune response Orthology biological process
mRNA catabolic process Orthology biological process

GO (Orthology)

50 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
3'-5'-exoribonuclease activity Hs molecular function
nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
deadenylation-dependent decapping of nuclear-transcribed mRNA Hs biological process
P-body Hs cellular component
transcriptional repressor activity, RNA polymerase II transcription factor binding Hs molecular function
nucleic acid binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
RNA binding Hs molecular function
nuclease activity Hs molecular function
exonuclease activity Hs molecular function
exoribonuclease activity Hs molecular function
poly(A)-specific ribonuclease activity Hs molecular function
signal transducer activity Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
carbohydrate metabolic process Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of translation Hs biological process
signal transduction Hs biological process
transcription factor binding Hs molecular function
positive regulation of cell proliferation Hs biological process
negative regulation of cell proliferation Hs biological process
negative regulation of gene expression Hs biological process
membrane Hs cellular component
nuclear body Hs cellular component
nuclear speck Hs cellular component
hydrolase activity Hs molecular function
CCR4-NOT complex Hs cellular component
CCR4-NOT core complex Hs cellular component
gene silencing by RNA Hs biological process
cytoplasmic mRNA processing body assembly Hs biological process
gene silencing by miRNA Hs biological process
regulation of tyrosine phosphorylation of STAT protein Hs biological process
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
defense response to virus Hs biological process
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
negative regulation of type I interferon-mediated signaling pathway Hs biological process
positive regulation of mRNA catabolic process Hs biological process
host cell PML body Hs cellular component
nucleic acid phosphodiester bond hydrolysis Hs biological process
RNA phosphodiester bond hydrolysis, exonucleolytic Hs biological process
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Hs biological process

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
3'-5'-exoribonuclease activity Hs molecular function 427 1.46e-152
P-body Hs cellular component 427 1.46e-152
transcriptional repressor activity, RNA polymerase II transcription factor binding Hs molecular function 427 1.46e-152
nucleic acid binding Hs molecular function 427 1.46e-152
transcription factor activity, sequence-specific DNA binding Hs molecular function 427 1.46e-152
RNA binding Hs molecular function 427 1.46e-152
nuclease activity Hs molecular function 427 1.46e-152
exonuclease activity Hs molecular function 427 1.46e-152
exoribonuclease activity Hs molecular function 427 1.46e-152
poly(A)-specific ribonuclease activity Hs molecular function 427 1.46e-152
signal transducer activity Hs molecular function 427 1.46e-152
protein binding Hs molecular function 427 1.46e-152
intracellular Hs cellular component 397 2.14e-140
nucleus Hs cellular component 427 1.46e-152
cytoplasm Hs cellular component 427 1.46e-152
cytosol Hs cellular component 427 1.46e-152
transcription factor binding Hs molecular function 427 1.46e-152
membrane Hs cellular component 427 1.46e-152
nuclear body Hs cellular component 427 1.46e-152
nuclear speck Hs cellular component 427 1.46e-152
hydrolase activity Hs molecular function 427 1.46e-152
CCR4-NOT complex Hs cellular component 427 1.46e-152
CCR4-NOT core complex Hs cellular component 427 1.46e-152
metal ion binding Hs molecular function 427 1.46e-152
host cell PML body Hs cellular component 427 1.46e-152

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Gene3D molecular function 2.7E-119
poly(A)-specific ribonuclease activity PANTHER molecular function 3.6E-165