- Gene 'Phmamm.CG.MTP2014.S2...'
Gene Card
Best human hits
EXOSC4; EXOSC5; EXOSC6
Species
Unique Gene ID
Phmamm.g00000073
Gene Model ID
Phmamm.CG.MTP2014.S2.g00073
Location
S2:215254..216085
Transcript Models and Sequences
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
3 results
| IPR Term | Analysis | Definition |
|---|---|---|
| ExoRNase_PH_dom2_sf | SUPERFAMILY | Exoribonuclease, PH domain 2 superfamily |
| Ribosomal_S5_D2-typ_fold | SUPERFAMILY | Ribosomal protein S5 domain 2-type fold |
| ExoRNase_PH_dom1 | Pfam | Exoribonuclease, phosphorolytic domain 1 |
GOSlim
23 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nuclear-transcribed mRNA catabolic process | Orthology | biological process |
| RNA binding | Orthology | molecular function |
| protein binding | Blast | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| nucleolus | Orthology | cellular component |
| cytoplasm | Orthology | cellular component |
| cytosol | Orthology | cellular component |
| RNA catabolic process | Orthology | biological process |
| nuclear lumen | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| cytoplasmic part | Orthology | cellular component |
| intracellular part | Orthology | cellular component |
| RNA processing | Orthology | biological process |
| mRNA catabolic process | Orthology | biological process |
| immune response | Orthology | biological process |
| system development | Orthology | biological process |
| DNA metabolic process | Orthology | biological process |
| RNA metabolic process | Blast | biological process |
| hydrolase activity | Blast | molecular function |
| intracellular organelle part | Blast | cellular component |
| intracellular non-membrane-bounded organelle | Blast | cellular component |
| cytoskeleton | Blast | cellular component |
GO (Orthology)
19 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| nuclear exosome (RNase complex) | Hs | cellular component |
| cytoplasmic exosome (RNase complex) | Hs | cellular component |
| exosome (RNase complex) | Hs | cellular component |
| RNA binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| nucleolus | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| cytosol | Hs | cellular component |
| rRNA processing | Hs | biological process |
| rRNA catabolic process | Hs | biological process |
| rRNA 3'-end processing | Hs | biological process |
| nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | Hs | biological process |
| U4 snRNA 3'-end processing | Hs | biological process |
| regulation of mRNA stability | Hs | biological process |
| exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | Hs | biological process |
| isotype switching | Hs | biological process |
| nuclear mRNA surveillance | Hs | biological process |
| polyadenylation-dependent snoRNA 3'-end processing | Hs | biological process |
GO (Blast)
14 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| 3'-5'-exoribonuclease activity | Hs | molecular function | 62.8 | 1.52e-11 |
| nuclear exosome (RNase complex) | Hs | cellular component | 112 | 1.11e-29 |
| cytoplasmic exosome (RNase complex) | Hs | cellular component | 112 | 1.11e-29 |
| exosome (RNase complex) | Hs | cellular component | 112 | 1.11e-29 |
| RNA binding | Hs | molecular function | 112 | 1.11e-29 |
| protein binding | Hs | molecular function | 62.8 | 1.52e-11 |
| nucleus | Hs | cellular component | 112 | 1.11e-29 |
| nucleoplasm | Hs | cellular component | 112 | 1.11e-29 |
| nucleolus | Hs | cellular component | 112 | 1.11e-29 |
| cytoplasm | Hs | cellular component | 112 | 1.11e-29 |
| cytosol | Hs | cellular component | 112 | 1.11e-29 |
| AU-rich element binding | Hs | molecular function | 62.8 | 1.52e-11 |
| transcriptionally active chromatin | Hs | cellular component | 62.8 | 1.52e-11 |
| intermediate filament cytoskeleton | Hs | cellular component | 62.8 | 1.52e-11 |
| GO Term | Analysis | Type | e-value |
|---|
