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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S2...'

Gene Card

Best human hits

DDX27; DDX47; DDX56

Species

P.mammillata

Unique Gene ID

Phmamm.g00000070

Gene Model ID

Phmamm.CG.MTP2014.S2.g00070

Location

S2:199366..205360

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

5 results

AHC0AAA35YI09

Plate: Plate_35_I09

AHC0AAA69YB13

Plate: Plate_69_B13

AHC0AAA70YL04

Plate: Plate_70_L04

AHC0AAA206YE02

Plate: Plate_206_E02

AHC0AAA242YL21

Plate: Plate_242_L21

WashU Genome Browser

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Genomicus Synteny Browser

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Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_C Pfam Helicase, C-terminal
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C SMART Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal

GOSlim

16 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Blast molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
membrane Orthology cellular component
hydrolase activity Orthology molecular function
nucleoside-triphosphatase activity Orthology molecular function
RNA processing Orthology biological process
RNA metabolic process Orthology biological process
neuron projection development Orthology biological process
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
rRNA processing Hs biological process
RNA secondary structure unwinding Hs biological process
positive regulation of neuron projection development Hs biological process
membrane Hs cellular component
hydrolase activity Hs molecular function
ribosome biogenesis Hs biological process

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 555 0.0
nucleic acid binding Hs molecular function 555 0.0
RNA binding Hs molecular function 555 0.0
ATP-dependent RNA helicase activity Hs molecular function 555 0.0
helicase activity Hs molecular function 555 0.0
protein binding Hs molecular function 192 2.99e-55
ATP binding Hs molecular function 555 0.0
nucleus Hs cellular component 555 0.0
nucleoplasm Hs cellular component 192 2.99e-55
chromosome Hs cellular component 186 8.81e-51
nucleolus Hs cellular component 555 0.0
cytoplasm Hs cellular component 555 0.0
membrane Hs cellular component 555 0.0
hydrolase activity Hs molecular function 555 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 7.4E-37
ATP binding Pfam molecular function 7.4E-37