Aniseed - Gene card

Gene 'Phmamm.CG.MTP2014.S1...'

Gene Card

Best human hits

LENG8; MCM3AP; SAC3D1

Species

P.mammillata

Unique Gene ID

Phmamm.g00000061

Gene Model ID

Phmamm.CG.MTP2014.S1.g00061

Location

S1:665907..686288

Transcript Models and Sequences

Phmamm.CG.MTP2014.S1.g00061.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

5 results

AHC0AAA211YA21

Plate: Plate_211_A21

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
MCM3AP_GANP	Pfam	Germinal-centre associated nuclear protein, MCM3AP domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
SAC3/GANP/THP3	Pfam	SAC3/GANP/THP3

GOSlim

16 results

GO Term	Annotation Origin	Type
immune system process	Orthology	biological process
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
nuclear envelope	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
protein transport	Orthology	biological process
transferase activity	Orthology	molecular function
nuclear membrane	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular protein transport	Orthology	biological process
establishment of protein localization to organelle	Orthology	biological process
organic substance transport	Orthology	biological process

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
immune system process	Hs	biological process
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
nucleus	Hs	cellular component
nuclear envelope	Hs	cellular component
nuclear pore	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
protein import into nucleus	Hs	biological process
protein transport	Hs	biological process
transferase activity	Hs	molecular function
transferase activity, transferring acyl groups	Hs	molecular function
nuclear membrane	Hs	cellular component
mRNA transport	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	350	2.20e-98
DNA binding	Hs	molecular function	350	2.20e-98
protein binding	Hs	molecular function	47.0	1.03e-04
nucleus	Hs	cellular component	350	2.20e-98
nuclear envelope	Hs	cellular component	350	2.20e-98
nuclear pore	Hs	cellular component	350	2.20e-98
nucleoplasm	Hs	cellular component	350	2.20e-98
cytoplasm	Hs	cellular component	350	2.20e-98
cytosol	Hs	cellular component	350	2.20e-98
transferase activity	Hs	molecular function	350	2.20e-98
transferase activity, transferring acyl groups	Hs	molecular function	350	2.20e-98
nuclear membrane	Hs	cellular component	350	2.20e-98

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	4.62E-9