Aniseed - Gene card

Gene 'Phmamm.CG.MTP2014.S1...'

Gene Card

Best human hits

ITGA10; ITGA11; ITGAD

Species

P.mammillata

Unique Gene ID

Phmamm.g00000019

Gene Model ID

Phmamm.CG.MTP2014.S1.g00019

Location

S1:184564..201707

Transcript Models and Sequences

Phmamm.CG.MTP2014.S1.g00019.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
Integrin_alpha	PRINTS	Integrin alpha chain
Int_alpha_beta-p	ProSiteProfiles	Integrin alpha beta-propellor
Integrin_alpha_N	Gene3D	Integrin alpha, N-terminal
Integrin_dom_sf	SUPERFAMILY	Integrin domain superfamily
VWF_A	SMART	von Willebrand factor, type A
vWFA_dom_sf	SUPERFAMILY	von Willebrand factor A-like domain superfamily
Int_alpha_beta-p	SMART	Integrin alpha beta-propellor
vWFA_dom_sf	Gene3D	von Willebrand factor A-like domain superfamily
VWF_A	Pfam	von Willebrand factor, type A
VWF_A	ProSiteProfiles	von Willebrand factor, type A
FG-GAP	Pfam	FG-GAP repeat
Integrin_alpha-2	Pfam	Integrin alpha-2

GOSlim

13 results

GO Term	Annotation Origin	Type
plasma membrane	Blast	cellular component
focal adhesion	Blast	cellular component
cell adhesion	Blast	biological process
cell surface	Blast	cellular component
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
metal ion binding	Blast	molecular function
protein heterodimerization activity	Blast	molecular function
macromolecular complex binding	Blast	molecular function
integral component of plasma membrane	Blast	cellular component
macromolecular complex	Blast	cellular component
cell surface receptor signaling pathway	Blast	biological process
transmembrane signaling receptor activity	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
collagen binding	Hs	molecular function	215	8.71e-57
plasma membrane	Hs	cellular component	215	8.71e-57
focal adhesion	Hs	cellular component	215	8.71e-57
integrin complex	Hs	cellular component	215	8.71e-57
cell surface	Hs	cellular component	214	1.78e-56
membrane	Hs	cellular component	215	8.71e-57
integral component of membrane	Hs	cellular component	215	8.71e-57
integrin alpha10-beta1 complex	Hs	cellular component	204	1.73e-53
integrin alpha11-beta1 complex	Hs	cellular component	215	8.71e-57
collagen receptor activity	Hs	molecular function	215	8.71e-57
metal ion binding	Hs	molecular function	215	8.71e-57
protein heterodimerization activity	Hs	molecular function	214	1.78e-56
collagen binding involved in cell-matrix adhesion	Hs	molecular function	215	8.71e-57

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
cell adhesion	PRINTS	biological process	1.9E-36
integrin complex	PRINTS	cellular component	1.9E-36