Aniseed - Gene card

Gene 'Phfumi.CG.MTP2014.S2...'

Gene Card

Best human hits

DHX16; DHX35; DHX8

Species

P.fumigata

Unique Gene ID

Phfumi.g00000060

Gene Model ID

Phfumi.CG.MTP2014.S2.g00060

Location

S2:400971..403330

Transcript Models and Sequences

Phfumi.CG.MTP2014.S2.g00060.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Helicase_C	SMART	Helicase, C-terminal
Helicase_C	Pfam	Helicase, C-terminal
Helicase-assoc_dom	SMART	Helicase-associated domain
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Helicase-assoc_dom	Pfam	Helicase-associated domain
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
DUF1605	Pfam	Domain of unknown function DUF1605
Helicase_C	CDD	Helicase, C-terminal
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
Helicase_C	ProSiteProfiles	Helicase, C-terminal

GOSlim

14 results

GO Term	Annotation Origin	Type
nucleotide binding	Blast	molecular function
nucleic acid binding	Blast	molecular function
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
ATP binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
nuclear body	Blast	cellular component
hydrolase activity	Blast	molecular function
identical protein binding	Blast	molecular function
nucleoside-triphosphatase activity	Blast	molecular function
nuclear part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	649	0.0
nucleic acid binding	Hs	molecular function	521	2.88e-171
RNA binding	Hs	molecular function	649	0.0
RNA helicase activity	Hs	molecular function	499	7.93e-165
ATP-dependent RNA helicase activity	Hs	molecular function	649	0.0
helicase activity	Hs	molecular function	649	0.0
protein binding	Hs	molecular function	521	2.88e-171
ATP binding	Hs	molecular function	649	0.0
nucleus	Hs	cellular component	521	2.88e-171
nucleoplasm	Hs	cellular component	521	2.88e-171
spliceosomal complex	Hs	cellular component	649	0.0
cytoplasm	Hs	cellular component	649	0.0
nuclear body	Hs	cellular component	521	2.88e-171
hydrolase activity	Hs	molecular function	649	0.0
ATPase activity	Hs	molecular function	499	7.93e-165
identical protein binding	Hs	molecular function	521	2.88e-171
U2-type catalytic step 2 spliceosome	Hs	cellular component	521	2.88e-171
catalytic step 2 spliceosome	Hs	cellular component	649	0.0

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
helicase activity	SMART	molecular function	9.3E-22