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Gene Card

Best human hits

RORA; RORB; RORC

Species

P.fumigata

Unique Gene ID

Phfumi.g00000056

Gene Model ID

Phfumi.CG.MTP2014.S2.g00056

Location

S2:331177..338264

Transcript Models and Sequences

  Phfumi.CG.MTP2014.S2.g00056.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
Nuclear_hrmn_rcpt PRINTS Nuclear hormone receptor
Znf_hrmn_rcpt ProSitePatterns Zinc finger, nuclear hormone receptor-type
ThyrH_rcpt PRINTS Thyroid hormone receptor
Nucl_hrmn_rcpt_lig-bd ProSiteProfiles Nuclear hormone receptor, ligand-binding domain
NHR_like_dom_sf SUPERFAMILY Nuclear hormone receptor-like domain superfamily
Nucl_hrmn_rcpt_lig-bd SMART Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt ProSiteProfiles Zinc finger, nuclear hormone receptor-type
Znf_NHR/GATA Gene3D Zinc finger, NHR/GATA-type
Znf_hrmn_rcpt PRINTS Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd Pfam Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt SMART Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt Pfam Zinc finger, nuclear hormone receptor-type

GOSlim

21 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
transcription factor binding Blast molecular function
zinc ion binding Blast molecular function
nuclear body Blast cellular component
sequence-specific DNA binding Blast molecular function
metal ion binding Blast molecular function
transcription regulatory region sequence-specific DNA binding Blast molecular function
signal transduction Blast biological process
response to lipid Blast biological process
signaling receptor activity Blast molecular function
cellular response to organic substance Blast biological process
organic cyclic compound binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 384 2.53e-124
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 387 1.87e-126
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 387 1.87e-126
core promoter sequence-specific DNA binding Hs molecular function 384 2.53e-124
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 387 1.87e-126
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 356 3.75e-114
transcription corepressor binding Hs molecular function 384 2.53e-124
transcription coactivator binding Hs molecular function 384 2.53e-124
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 384 2.53e-124
DNA binding Hs molecular function 387 1.87e-126
transcription factor activity, sequence-specific DNA binding Hs molecular function 387 1.87e-126
steroid hormone receptor activity Hs molecular function 387 1.87e-126
nuclear receptor activity Hs molecular function 387 1.87e-126
protein binding Hs molecular function 387 1.87e-126
nucleus Hs cellular component 387 1.87e-126
nucleoplasm Hs cellular component 387 1.87e-126
beta-catenin binding Hs molecular function 384 2.53e-124
transcription factor binding Hs molecular function 387 1.87e-126
oxysterol binding Hs molecular function 384 2.53e-124
zinc ion binding Hs molecular function 387 1.87e-126
nuclear body Hs cellular component 356 3.75e-114
sequence-specific DNA binding Hs molecular function 387 1.87e-126
metal ion binding Hs molecular function 387 1.87e-126
transcription factor activity, direct ligand regulated sequence-specific DNA binding Hs molecular function 384 2.53e-124

GO (InterProScan)

9 results

GO Term Analysis Type e-value
DNA binding PRINTS molecular function 1.2E-19
transcription factor activity, sequence-specific DNA binding SMART molecular function 2.9E-39
steroid hormone receptor activity PRINTS molecular function 1.2E-19
nucleus SMART cellular component 2.9E-39
regulation of transcription, DNA-templated SMART biological process 2.9E-39
zinc ion binding SMART molecular function 2.9E-39
steroid hormone mediated signaling pathway SMART biological process 7.8E-26
sequence-specific DNA binding SMART molecular function 2.9E-39
thyroid hormone receptor activity PRINTS molecular function 4.2E-8

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