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Gene Card

Best human hits

SNW1

Species

M.oculata

Unique Gene ID

Moocul.g00014192

Gene Model ID

Moocul.CG.ELv1_2.S121012.g14192

Location

S121012:29366..32991

Transcript Models and Sequences

  Moocul.CG.ELv1_2.S121012.g14192.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
SKI-int_prot_SKIP_SNW-dom Pfam SKI-interacting protein SKIP, SNW domain
SKI-int_prot_SKIP PANTHER SKI-interacting protein, SKIP

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

47 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
generation of catalytic spliceosome for second transesterification step Hs biological process
mRNA splicing, via spliceosome Hs biological process
chromatin Hs cellular component
transcription coactivator activity Hs molecular function
transcription corepressor activity Hs molecular function
RNA binding Hs molecular function
Notch binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
mRNA processing Hs biological process
Notch signaling pathway Hs biological process
positive regulation of transcription of Notch receptor target Hs biological process
cyclin/CDK positive transcription elongation factor complex Hs cellular component
RNA splicing Hs biological process
viral process Hs biological process
nuclear matrix Hs cellular component
nuclear body Hs cellular component
nuclear speck Hs cellular component
enzyme binding Hs molecular function
positive regulation of transforming growth factor beta receptor signaling pathway Hs biological process
nuclear hormone receptor binding Hs molecular function
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator Hs biological process
vitamin D receptor binding Hs molecular function
retinoic acid receptor binding Hs molecular function
positive regulation of Notch signaling pathway Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
SMAD binding Hs molecular function
positive regulation of mRNA splicing, via spliceosome Hs biological process
retinoic acid receptor signaling pathway Hs biological process
regulation of retinoic acid receptor signaling pathway Hs biological process
androgen receptor binding Hs molecular function
positive regulation of neurogenesis Hs biological process
positive regulation of histone H3-K4 methylation Hs biological process
U2-type catalytic step 2 spliceosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component
post-mRNA release spliceosomal complex Hs cellular component
SMAD protein complex Hs cellular component
cellular response to retinoic acid Hs biological process

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromatin Hs cellular component 326 3.96e-108
transcription coactivator activity Hs molecular function 326 3.96e-108
transcription corepressor activity Hs molecular function 326 3.96e-108
RNA binding Hs molecular function 326 3.96e-108
Notch binding Hs molecular function 326 3.96e-108
protein binding Hs molecular function 326 3.96e-108
nucleus Hs cellular component 326 3.96e-108
nucleoplasm Hs cellular component 326 3.96e-108
spliceosomal complex Hs cellular component 326 3.96e-108
cytoplasm Hs cellular component 326 3.96e-108
cyclin/CDK positive transcription elongation factor complex Hs cellular component 326 3.96e-108
nuclear matrix Hs cellular component 326 3.96e-108
nuclear body Hs cellular component 326 3.96e-108
nuclear speck Hs cellular component 326 3.96e-108
enzyme binding Hs molecular function 326 3.96e-108
nuclear hormone receptor binding Hs molecular function 326 3.96e-108
vitamin D receptor binding Hs molecular function 326 3.96e-108
retinoic acid receptor binding Hs molecular function 326 3.96e-108
SMAD binding Hs molecular function 326 3.96e-108
androgen receptor binding Hs molecular function 326 3.96e-108
U2-type catalytic step 2 spliceosome Hs cellular component 326 3.96e-108
catalytic step 2 spliceosome Hs cellular component 326 3.96e-108
post-mRNA release spliceosomal complex Hs cellular component 326 3.96e-108
SMAD protein complex Hs cellular component 326 3.96e-108

GO (InterProScan)

2 results

GO Term Analysis Type e-value
mRNA splicing, via spliceosome PANTHER biological process 3.1E-134
spliceosomal complex PANTHER cellular component 3.1E-134

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