Aniseed - Gene card

Gene 'Moocul.CG.ELv1_2.S36...'

Gene Card

Best human hits

P4HA1; P4HA2; P4HA3

Species

M.oculata

Unique Gene ID

Moocul.g00000073

Gene Model ID

Moocul.CG.ELv1_2.S3630.g00073

Location

S3630:624..10089

Transcript Models and Sequences

Moocul.CG.ELv1_2.S3630.g00073.01.t
Moocul.CG.ELv1_2.S3630.g00073.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Pro_4_hyd_alph_N	Pfam	Prolyl 4-hydroxylase alpha-subunit, N-terminal
Pro_4_hyd_alph	SMART	Prolyl 4-hydroxylase, alpha subunit
Oxoglu/Fe-dep_dioxygenase	Pfam	Oxoglutarate/iron-dependent dioxygenase
TPR-like_helical_dom_sf	SUPERFAMILY	Tetratricopeptide-like helical domain superfamily
TPR-like_helical_dom_sf	Gene3D	Tetratricopeptide-like helical domain superfamily
Oxoglu/Fe-dep_dioxygenase	ProSiteProfiles	Oxoglutarate/iron-dependent dioxygenase

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
procollagen-proline 4-dioxygenase activity	Hs	molecular function
iron ion binding	Hs	molecular function
protein binding	Hs	molecular function
collagen trimer	Hs	cellular component
nucleoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
cytosol	Hs	cellular component
electron carrier activity	Hs	molecular function
membrane	Hs	cellular component
procollagen-proline 4-dioxygenase complex	Hs	cellular component
oxidoreductase activity	Hs	molecular function
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Hs	molecular function
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Hs	molecular function
peptidyl-proline hydroxylation to 4-hydroxy-L-proline	Hs	biological process
peptidyl-proline hydroxylation	Hs	biological process
electron transport chain	Hs	biological process
collagen fibril organization	Hs	biological process
L-ascorbic acid binding	Hs	molecular function
identical protein binding	Hs	molecular function
intracellular membrane-bounded organelle	Hs	cellular component
metal ion binding	Hs	molecular function
dioxygenase activity	Hs	molecular function
oxidation-reduction process	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
procollagen-proline 4-dioxygenase activity	Hs	molecular function	473	1.93e-156
iron ion binding	Hs	molecular function	473	1.93e-156
protein binding	Hs	molecular function	473	1.93e-156
collagen trimer	Hs	cellular component	473	1.93e-156
nucleoplasm	Hs	cellular component	454	2.54e-149
mitochondrion	Hs	cellular component	473	1.93e-156
endoplasmic reticulum	Hs	cellular component	473	1.93e-156
endoplasmic reticulum lumen	Hs	cellular component	473	1.93e-156
cytosol	Hs	cellular component	454	2.54e-149
electron carrier activity	Hs	molecular function	454	2.54e-149
membrane	Hs	cellular component	473	1.93e-156
procollagen-proline 4-dioxygenase complex	Hs	cellular component	473	1.93e-156
oxidoreductase activity	Hs	molecular function	473	1.93e-156
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Hs	molecular function	473	1.93e-156
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Hs	molecular function	473	1.93e-156
L-ascorbic acid binding	Hs	molecular function	473	1.93e-156
identical protein binding	Hs	molecular function	473	1.93e-156
intracellular membrane-bounded organelle	Hs	cellular component	473	1.93e-156
metal ion binding	Hs	molecular function	473	1.93e-156
dioxygenase activity	Hs	molecular function	473	1.93e-156

GO (InterProScan)

9 results

GO Term	Analysis	Type	e-value
procollagen-proline 4-dioxygenase activity	Pfam	molecular function	2.6E-39
iron ion binding	SMART	molecular function	1.2E-58
protein binding	Gene3D	molecular function	6.6E-39
endoplasmic reticulum	Pfam	cellular component	2.6E-39
oxidoreductase activity	Pfam	molecular function	3.5E-15
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Pfam	molecular function	2.6E-39
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SMART	molecular function	1.2E-58
L-ascorbic acid binding	SMART	molecular function	1.2E-58
oxidation-reduction process	SMART	biological process	1.2E-58