Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
EST1	Pfam	Telomerase activating protein Est1
TPR-like_helical_dom_sf	Gene3D	Tetratricopeptide-like helical domain superfamily
PIN_dom	Pfam	PIN domain
DNA/RNA-bd_Est1-type	Pfam	DNA/RNA-binding domain, Est1-type
PIN_dom	SMART	PIN domain
TPR-like_helical_dom_sf	SUPERFAMILY	Tetratricopeptide-like helical domain superfamily
PIN-like_dom_sf	SUPERFAMILY	PIN-like domain superfamily

GOSlim

29 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
hydrolase activity	Orthology	molecular function
ubiquitin protein ligase binding	Blast	molecular function
metal ion binding	Orthology	molecular function
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
RNA metabolic process	Orthology	biological process
intracellular protein transport	Orthology	biological process
gene expression	Orthology	biological process
organelle organization	Orthology	biological process
DNA metabolic process	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
dephosphorylation	Orthology	biological process
regulation of cellular metabolic process	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
macromolecular complex binding	Orthology	molecular function
RNA catabolic process	Orthology	biological process
regulation of gene expression	Orthology	biological process
enzyme binding	Orthology	molecular function
cytoskeleton	Blast	cellular component

GO (Orthology)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
telomerase catalytic core complex	Hs	cellular component
chromosome, telomeric region	Hs	cellular component
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
endoribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
chromosome	Hs	cellular component
telomerase holoenzyme complex	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
mRNA export from nucleus	Hs	biological process
hydrolase activity	Hs	molecular function
regulation of telomere maintenance via telomerase	Hs	biological process
exon-exon junction complex	Hs	cellular component
regulation of dephosphorylation	Hs	biological process
telomeric DNA binding	Hs	molecular function
ribonucleoprotein complex binding	Hs	molecular function
regulation of RNA stability	Hs	biological process
metal ion binding	Hs	molecular function
telomerase RNA binding	Hs	molecular function
DNA polymerase binding	Hs	molecular function
nucleic acid phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis, endonucleolytic	Hs	biological process

GO (Blast)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
telomerase catalytic core complex	Hs	cellular component	519	2.34e-161
chromosome, telomeric region	Hs	cellular component	519	2.34e-161
DNA binding	Hs	molecular function	519	2.34e-161
RNA binding	Hs	molecular function	519	2.34e-161
nuclease activity	Hs	molecular function	519	2.34e-161
endonuclease activity	Hs	molecular function	519	2.34e-161
endoribonuclease activity	Hs	molecular function	519	2.34e-161
ribonuclease activity	Hs	molecular function	104	1.64e-22
protein binding	Hs	molecular function	519	2.34e-161
nucleus	Hs	cellular component	519	2.34e-161
chromosome	Hs	cellular component	519	2.34e-161
telomerase holoenzyme complex	Hs	cellular component	519	2.34e-161
nucleolus	Hs	cellular component	519	2.34e-161
cytoplasm	Hs	cellular component	519	2.34e-161
cytosol	Hs	cellular component	519	2.34e-161
hydrolase activity	Hs	molecular function	519	2.34e-161
ubiquitin protein ligase binding	Hs	molecular function	84.0	3.43e-16
exon-exon junction complex	Hs	cellular component	519	2.34e-161
telomeric DNA binding	Hs	molecular function	519	2.34e-161
histone deacetylase binding	Hs	molecular function	84.0	3.43e-16
ribonucleoprotein complex binding	Hs	molecular function	519	2.34e-161
intermediate filament cytoskeleton	Hs	cellular component	104	1.64e-22
metal ion binding	Hs	molecular function	519	2.34e-161
protein phosphatase 2A binding	Hs	molecular function	104	1.64e-22
telomerase RNA binding	Hs	molecular function	519	2.34e-161
DNA polymerase binding	Hs	molecular function	519	2.34e-161

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	SUPERFAMILY	molecular function	7.68E-74

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location