Gene Card
Best human hits
COL1A1; COL1A2; COL3A1
Species
Unique Gene ID
Harore.g00000049
Gene Model ID
Harore.CG.MTP2014.S10.g00049
Location
S10:617477..620488
Transcript Models and Sequences
n/a
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
5 results
| IPR Term | Analysis | Definition |
|---|---|---|
| TNF_dom | ProSiteProfiles | Tumour necrosis factor domain |
| Tumour_necrosis_fac-like_dom | Gene3D | Tumour necrosis factor-like domain superfamily |
| TNF_dom | Pfam | Tumour necrosis factor domain |
| Tumour_necrosis_fac-like_dom | SUPERFAMILY | Tumour necrosis factor-like domain superfamily |
| TNF_dom | SMART | Tumour necrosis factor domain |
GOSlim
40 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| integrin binding | Blast | molecular function |
| protein binding | Orthology | molecular function |
| extracellular region | Orthology | cellular component |
| extracellular space | Blast | cellular component |
| cytoplasm | Blast | cellular component |
| endoplasmic reticulum | Blast | cellular component |
| endoplasmic reticulum lumen | Blast | cellular component |
| Golgi apparatus | Blast | cellular component |
| cytokine-mediated signaling pathway | Orthology | biological process |
| identical protein binding | Blast | molecular function |
| metal ion binding | Blast | molecular function |
| extracellular exosome | Blast | cellular component |
| positive regulation of canonical Wnt signaling pathway | Orthology | biological process |
| immune response | Orthology | biological process |
| membrane | Orthology | cellular component |
| receptor binding | Orthology | molecular function |
| endoplasmic reticulum membrane | Orthology | cellular component |
| cytoskeleton | Orthology | cellular component |
| plasma membrane | Orthology | cellular component |
| integral component of plasma membrane | Orthology | cellular component |
| multicellular organism development | Orthology | biological process |
| gene expression | Orthology | biological process |
| positive regulation of gene expression | Orthology | biological process |
| integral component of membrane | Orthology | cellular component |
| cell differentiation | Orthology | biological process |
| intracellular membrane-bounded organelle | Orthology | cellular component |
| apical part of cell | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| cell adhesion | Orthology | biological process |
| animal organ development | Orthology | biological process |
| intracellular non-membrane-bounded organelle | Orthology | cellular component |
| transcription factor activity, sequence-specific DNA binding | Orthology | molecular function |
| intracellular signal transduction | Orthology | biological process |
| positive regulation of signal transduction | Orthology | biological process |
| anatomical structure formation involved in morphogenesis | Orthology | biological process |
| enzyme binding | Blast | molecular function |
| extracellular region part | Blast | cellular component |
| structural molecule activity | Blast | molecular function |
| cytoplasmic vesicle | Blast | cellular component |
| endomembrane system | Blast | cellular component |
GO (Orthology)
28 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| protein binding | Hs | molecular function |
| extracellular region | Hs | cellular component |
| collagen trimer | Hs | cellular component |
| cell-matrix adhesion | Hs | biological process |
| skin development | Hs | biological process |
| positive regulation of canonical Wnt signaling pathway | Hs | biological process |
| tumor necrosis factor receptor binding | Hs | molecular function |
| immune response | Hs | biological process |
| membrane | Hs | cellular component |
| receptor binding | Hs | molecular function |
| endoplasmic reticulum membrane | Hs | cellular component |
| lipid droplet | Hs | cellular component |
| cytoskeleton | Hs | cellular component |
| plasma membrane | Hs | cellular component |
| integral component of plasma membrane | Hs | cellular component |
| multicellular organism development | Hs | biological process |
| gene expression | Hs | biological process |
| positive regulation of gene expression | Hs | biological process |
| integral component of membrane | Hs | cellular component |
| cell differentiation | Hs | biological process |
| tumor necrosis factor-mediated signaling pathway | Hs | biological process |
| positive regulation of I-kappaB kinase/NF-kappaB signaling | Hs | biological process |
| intracellular membrane-bounded organelle | Hs | cellular component |
| pigmentation | Hs | biological process |
| apical part of cell | Hs | cellular component |
| positive regulation of NF-kappaB transcription factor activity | Hs | biological process |
| salivary gland cavitation | Hs | biological process |
| trachea gland development | Hs | biological process |
GO (Blast)
22 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| protease binding | Hs | molecular function | 55.5 | 3.50e-08 |
| integrin binding | Hs | molecular function | 53.1 | 1.64e-07 |
| extracellular matrix structural constituent | Hs | molecular function | 55.5 | 3.50e-08 |
| protein binding | Hs | molecular function | 55.5 | 3.50e-08 |
| extracellular region | Hs | cellular component | 55.5 | 3.50e-08 |
| proteinaceous extracellular matrix | Hs | cellular component | 55.5 | 3.50e-08 |
| collagen trimer | Hs | cellular component | 55.5 | 3.50e-08 |
| collagen type I trimer | Hs | cellular component | 55.5 | 3.50e-08 |
| collagen type III trimer | Hs | cellular component | 53.1 | 1.64e-07 |
| extracellular space | Hs | cellular component | 55.5 | 3.50e-08 |
| cytoplasm | Hs | cellular component | 51.6 | 5.05e-07 |
| endoplasmic reticulum | Hs | cellular component | 55.5 | 3.50e-08 |
| endoplasmic reticulum lumen | Hs | cellular component | 55.5 | 3.50e-08 |
| Golgi apparatus | Hs | cellular component | 51.6 | 5.05e-07 |
| secretory granule | Hs | cellular component | 51.6 | 5.05e-07 |
| protein binding, bridging | Hs | molecular function | 55.5 | 3.50e-08 |
| extracellular matrix | Hs | cellular component | 55.5 | 3.50e-08 |
| identical protein binding | Hs | molecular function | 55.5 | 3.50e-08 |
| SMAD binding | Hs | molecular function | 55.5 | 3.50e-08 |
| metal ion binding | Hs | molecular function | 55.5 | 3.50e-08 |
| platelet-derived growth factor binding | Hs | molecular function | 55.5 | 3.50e-08 |
| extracellular exosome | Hs | cellular component | 55.5 | 3.50e-08 |
GO (InterProScan)
4 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| protein binding | Gene3D | molecular function | 1.9E-25 |
| tumor necrosis factor receptor binding | Pfam | molecular function | 5.9E-8 |
| immune response | Pfam | biological process | 5.9E-8 |
| membrane | Pfam | cellular component | 5.9E-8 |
