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GENE CARD

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Gene Card

Best human hits

GFAP; INA; VIM

Species

H.roretzi

Unique Gene ID

Harore.g00000001

Gene Model ID

Harore.CG.MTP2014.S105.g00001

Location

S105:41954..44832

Transcript Models and Sequences

  Harore.CG.MTP2014.S105.g00001.01.t
Harore.CG.MTP2014.S105.g00001.02.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
IF PANTHER Intermediate filament protein
IF SMART Intermediate filament protein
IF Pfam Intermediate filament protein

GOSlim

35 results

GO Term Annotation Origin Type
integrin binding Blast molecular function
structural molecule activity Blast molecular function
protein binding Blast molecular function
extracellular space Blast cellular component
intracellular Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
lysosome Blast cellular component
peroxisome Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
protein C-terminus binding Blast molecular function
membrane Blast cellular component
kinase binding Blast molecular function
cell leading edge Blast cellular component
nuclear membrane Blast cellular component
identical protein binding Blast molecular function
cell projection Blast cellular component
neuron projection Blast cellular component
myelin sheath Blast cellular component
cell body Blast cellular component
extracellular exosome Blast cellular component
RNA binding Blast molecular function
organelle organization Blast biological process
macromolecular complex Blast cellular component
cytoskeletal part Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
cytoplasmic vesicle Blast cellular component
plasma membrane region Blast cellular component
membrane part Blast cellular component
lysosomal membrane Blast cellular component
macromolecular complex binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

41 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
double-stranded RNA binding Hs molecular function 180 9.49e-52
integrin binding Hs molecular function 178 1.94e-51
structural molecule activity Hs molecular function 180 9.49e-52
structural constituent of cytoskeleton Hs molecular function 180 9.49e-52
structural constituent of eye lens Hs molecular function 180 9.49e-52
protein binding Hs molecular function 180 9.49e-52
extracellular space Hs cellular component 163 2.59e-45
intracellular Hs cellular component 178 1.94e-51
nucleoplasm Hs cellular component 163 2.59e-45
cytoplasm Hs cellular component 180 9.49e-52
lysosome Hs cellular component 178 1.94e-51
peroxisome Hs cellular component 180 9.49e-52
cytosol Hs cellular component 180 9.49e-52
polysome Hs cellular component 180 9.49e-52
cytoskeleton Hs cellular component 180 9.49e-52
intermediate filament Hs cellular component 180 9.49e-52
neurofilament Hs cellular component 178 1.94e-51
plasma membrane Hs cellular component 180 9.49e-52
focal adhesion Hs cellular component 180 9.49e-52
protein C-terminus binding Hs molecular function 180 9.49e-52
membrane Hs cellular component 178 1.94e-51
kinase binding Hs molecular function 178 1.94e-51
protein domain specific binding Hs molecular function 180 9.49e-52
intracellular ribonucleoprotein complex Hs cellular component 180 9.49e-52
cell leading edge Hs cellular component 180 9.49e-52
nuclear membrane Hs cellular component 163 2.59e-45
cytoplasmic ribonucleoprotein granule Hs cellular component 163 2.59e-45
identical protein binding Hs molecular function 180 9.49e-52
cell projection Hs cellular component 180 9.49e-52
neuron projection Hs cellular component 180 9.49e-52
myelin sheath Hs cellular component 178 1.94e-51
cell body Hs cellular component 178 1.94e-51
intermediate filament cytoskeleton Hs cellular component 178 1.94e-51
phagocytic vesicle Hs cellular component 180 9.49e-52
extracellular exosome Hs cellular component 180 9.49e-52
scaffold protein binding Hs molecular function 180 9.49e-52
glial cell projection Hs cellular component 178 1.94e-51
astrocyte projection Hs cellular component 178 1.94e-51
astrocyte end-foot Hs cellular component 178 1.94e-51
cytoplasmic side of lysosomal membrane Hs cellular component 178 1.94e-51
keratin filament binding Hs molecular function 180 9.49e-52

GO (InterProScan)

2 results

GO Term Analysis Type e-value
structural molecule activity PANTHER molecular function 1.4E-62
intermediate filament PANTHER cellular component 1.4E-62

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