Login
Help

GENE CARD

Submit your Data

  1. > 
  2. Gene 'Phmamm.CG.MTP2014.S3...' > 
  3. Gene 'Cisavi.CG.ENS81.R26....' > 
  4. Gene 'Phfumi.CG.MTP2014.S5...' > 

Gene Card

Best human hits

DNA2; IGHMBP2; UPF1

Species

H.aurantium

Unique Gene ID

Haaura.g00001023

Gene Model ID

Haaura.CG.MTP2014.S39.g01023

Location

S39:94370..98009

Transcript Models and Sequences

  Haaura.CG.MTP2014.S39.g01023.01.t
Haaura.CG.MTP2014.S39.g01023.02.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
R3H_dom SMART R3H domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Znf_AN1 Pfam Zinc finger, AN1-type
SMUBP-2/Hcs1-like TIGRFAM Helicase SMUBP-2/Hcs1-like
AN1-like_Znf Gene3D AN1-like Zinc finger
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
AN1-like_Znf SUPERFAMILY AN1-like Zinc finger
Znf_AN1 ProSiteProfiles Zinc finger, AN1-type
Znf_AN1 SMART Zinc finger, AN1-type
R3H_dom ProSiteProfiles R3H domain
R3H_dom_sf Gene3D R3H domain superfamily
R3H_dom_sf SUPERFAMILY R3H domain superfamily
R3H_dom Pfam R3H domain
AAA+_ATPase SMART AAA+ ATPase domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
tRNA binding Hs molecular function
nucleotide binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
DNA helicase activity Hs molecular function
single-stranded DNA binding Hs molecular function
RNA binding Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
DNA replication Hs biological process
DNA repair Hs biological process
DNA recombination Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
translation Hs biological process
DNA-dependent ATPase activity Hs molecular function
transcription factor binding Hs molecular function
RNA-dependent ATPase activity Hs molecular function
zinc ion binding Hs molecular function
membrane Hs cellular component
hydrolase activity Hs molecular function
axon Hs cellular component
growth cone Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
DNA duplex unwinding Hs biological process
ATP-dependent 5'-3' RNA helicase activity Hs molecular function
cell projection Hs cellular component
ribosome binding Hs molecular function
ATP-dependent 5'-3' DNA helicase activity Hs molecular function
metal ion binding Hs molecular function
protein homooligomerization Hs biological process

GO (Blast)

49 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
tRNA binding Hs molecular function 683 0.0
nucleotide binding Hs molecular function 683 0.0
nuclear chromosome, telomeric region Hs cellular component 197 1.50e-51
chromatin Hs cellular component 197 1.50e-51
P-body Hs cellular component 197 1.50e-51
nucleic acid binding Hs molecular function 683 0.0
DNA binding Hs molecular function 683 0.0
DNA helicase activity Hs molecular function 683 0.0
chromatin binding Hs molecular function 197 1.50e-51
single-stranded DNA binding Hs molecular function 683 0.0
RNA binding Hs molecular function 683 0.0
catalytic activity Hs molecular function 177 3.03e-45
ATP-dependent RNA helicase activity Hs molecular function 197 1.50e-51
helicase activity Hs molecular function 683 0.0
nuclease activity Hs molecular function 177 3.03e-45
endonuclease activity Hs molecular function 177 3.03e-45
protein binding Hs molecular function 683 0.0
ATP binding Hs molecular function 683 0.0
nucleus Hs cellular component 683 0.0
nucleoplasm Hs cellular component 197 1.50e-51
cytoplasm Hs cellular component 683 0.0
mitochondrion Hs cellular component 177 3.03e-45
gamma DNA polymerase complex Hs cellular component 177 3.03e-45
cytosol Hs cellular component 197 1.50e-51
DNA-dependent ATPase activity Hs molecular function 683 0.0
transcription factor binding Hs molecular function 683 0.0
RNA-dependent ATPase activity Hs molecular function 683 0.0
zinc ion binding Hs molecular function 683 0.0
membrane Hs cellular component 683 0.0
hydrolase activity Hs molecular function 683 0.0
ATPase activity Hs molecular function 177 3.03e-45
site-specific endodeoxyribonuclease activity, specific for altered base Hs molecular function 177 3.03e-45
5'-flap endonuclease activity Hs molecular function 177 3.03e-45
axon Hs cellular component 683 0.0
growth cone Hs cellular component 683 0.0
intracellular ribonucleoprotein complex Hs cellular component 683 0.0
ATP-dependent 5'-3' RNA helicase activity Hs molecular function 683 0.0
exon-exon junction complex Hs cellular component 197 1.50e-51
telomeric DNA binding Hs molecular function 197 1.50e-51
mitochondrial nucleoid Hs cellular component 177 3.03e-45
cell projection Hs cellular component 683 0.0
ribosome binding Hs molecular function 683 0.0
5'-3' DNA helicase activity Hs molecular function 177 3.03e-45
ATP-dependent 5'-3' DNA helicase activity Hs molecular function 683 0.0
single-stranded DNA-dependent ATPase activity Hs molecular function 177 3.03e-45
supraspliceosomal complex Hs cellular component 197 1.50e-51
metal ion binding Hs molecular function 683 0.0
iron-sulfur cluster binding Hs molecular function 177 3.03e-45
4 iron, 4 sulfur cluster binding Hs molecular function 177 3.03e-45

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding Gene3D molecular function 2.6E-13
DNA binding TIGRFAM molecular function 9.6E-191
ATP binding TIGRFAM molecular function 9.6E-191
zinc ion binding Pfam molecular function 1.8E-9

Back to Top