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Gene Card

Best human hits

COL1A1; COL1A2; COL2A1

Species

C.savignyi

Unique Gene ID

Cisavi.g00001863

Gene Model ID

Cisavi.CG.ENS81.R131.263992-288199

Location

R131:263991..288199

Transcript Models and Sequences

  Cisavi.CG.ENS81.R131.263992-288199.05605.t
Cisavi.CG.ENS81.R131.263992-288199.05606.t
Cisavi.CG.ENS81.R131.263992-288199.05607.t
Cisavi.CG.ENS81.R131.263992-288199.05608.t
Cisavi.CG.ENS81.R131.263992-288199.05609.t
Cisavi.CG.ENS81.R131.263992-288199.05610.t
Cisavi.CG.ENS81.R131.263992-288199.05611.t
Cisavi.CG.ENS81.R131.263992-288199.05612.t
Cisavi.CG.ENS81.R131.263992-288199.05613.t
Cisavi.CG.ENS81.R131.263992-288199.05614.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
VWF_dom ProSiteProfiles VWFC domain
VWF_dom Pfam VWFC domain
VWF_dom ProSitePatterns VWFC domain
Fib_collagen_C SMART Fibrillar collagen, C-terminal
Fib_collagen_C ProDom Fibrillar collagen, C-terminal
VWF_dom SMART VWFC domain
Fib_collagen_C Pfam Fibrillar collagen, C-terminal
Collagen Pfam Collagen triple helix repeat
Fib_collagen_C ProSiteProfiles Fibrillar collagen, C-terminal

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

111 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
skeletal system development Hs biological process
cartilage condensation Hs biological process
ossification Hs biological process
blood vessel development Hs biological process
osteoblast differentiation Hs biological process
tissue homeostasis Hs biological process
intramembranous ossification Hs biological process
endochondral ossification Hs biological process
protease binding Hs molecular function
chondrocyte differentiation Hs biological process
heart morphogenesis Hs biological process
extracellular matrix structural constituent Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
proteinaceous extracellular matrix Hs cellular component
collagen trimer Hs cellular component
collagen type I trimer Hs cellular component
collagen type II trimer Hs cellular component
basement membrane Hs cellular component
extracellular space Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
endoplasmic reticulum lumen Hs cellular component
Golgi apparatus Hs cellular component
proteoglycan metabolic process Hs biological process
transforming growth factor beta receptor signaling pathway Hs biological process
Rho protein signal transduction Hs biological process
central nervous system development Hs biological process
response to nutrient Hs biological process
blood coagulation Hs biological process
visual perception Hs biological process
sensory perception of sound Hs biological process
regulation of blood pressure Hs biological process
response to mechanical stimulus Hs biological process
regulation of gene expression Hs biological process
positive regulation of epithelial to mesenchymal transition Hs biological process
protein transport Hs biological process
cytokine-mediated signaling pathway Hs biological process
extracellular matrix structural constituent conferring tensile strength Hs molecular function
secretory granule Hs cellular component
platelet activation Hs biological process
extracellular matrix organization Hs biological process
collagen fibril organization Hs biological process
positive regulation of cell migration Hs biological process
collagen catabolic process Hs biological process
protein binding, bridging Hs molecular function
notochord development Hs biological process
extracellular matrix Hs cellular component
response to nutrient levels Hs biological process
response to estradiol Hs biological process
collagen biosynthetic process Hs biological process
protein localization to nucleus Hs biological process
limb morphogenesis Hs biological process
collagen-activated tyrosine kinase receptor signaling pathway Hs biological process
wound healing Hs biological process
MHC class II protein binding Hs molecular function
inner ear morphogenesis Hs biological process
odontogenesis Hs biological process
response to drug Hs biological process
response to hydrogen peroxide Hs biological process
identical protein binding Hs molecular function
response to peptide hormone Hs biological process
skin development Hs biological process
skin morphogenesis Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
SMAD binding Hs molecular function
metal ion binding Hs molecular function
platelet-derived growth factor binding Hs molecular function
response to steroid hormone Hs biological process
skeletal system morphogenesis Hs biological process
embryonic skeletal system development Hs biological process
inner ear development Hs biological process
regulation of immune response Hs biological process
leukocyte migration Hs biological process
cartilage development Hs biological process
response to cAMP Hs biological process
response to hyperoxia Hs biological process
palate development Hs biological process
limb bud formation Hs biological process
embryonic skeletal joint morphogenesis Hs biological process
face morphogenesis Hs biological process
bone development Hs biological process
cartilage development involved in endochondral bone morphogenesis Hs biological process
extracellular exosome Hs cellular component
cellular response to amino acid stimulus Hs biological process
cellular response to mechanical stimulus Hs biological process
cellular response to retinoic acid Hs biological process
cellular response to tumor necrosis factor Hs biological process
cellular response to epidermal growth factor stimulus Hs biological process
cellular response to transforming growth factor beta stimulus Hs biological process
otic vesicle development Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
anterior head development Hs biological process
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand Hs biological process
integrin binding Hs molecular function
collagen type III trimer Hs cellular component
collagen type V trimer Hs cellular component
cell-matrix adhesion Hs biological process
integrin-mediated signaling pathway Hs biological process
heart development Hs biological process
aging Hs biological process
response to radiation Hs biological process
peptide cross-linking Hs biological process
cerebral cortex development Hs biological process
response to cytokine Hs biological process
positive regulation of Rho protein signal transduction Hs biological process
digestive tract development Hs biological process
eye morphogenesis Hs biological process
negative regulation of immune response Hs biological process
supramolecular fiber organization Hs biological process
negative regulation of neuron migration Hs biological process

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protease binding Hs molecular function 706 0.0
extracellular matrix structural constituent Hs molecular function 706 0.0
protein binding Hs molecular function 706 0.0
extracellular region Hs cellular component 706 0.0
proteinaceous extracellular matrix Hs cellular component 706 0.0
collagen trimer Hs cellular component 706 0.0
collagen type I trimer Hs cellular component 706 0.0
collagen type II trimer Hs cellular component 619 0.0
basement membrane Hs cellular component 619 0.0
extracellular space Hs cellular component 706 0.0
cytoplasm Hs cellular component 619 0.0
endoplasmic reticulum Hs cellular component 706 0.0
endoplasmic reticulum lumen Hs cellular component 706 0.0
Golgi apparatus Hs cellular component 618 0.0
extracellular matrix structural constituent conferring tensile strength Hs molecular function 619 0.0
secretory granule Hs cellular component 618 0.0
protein binding, bridging Hs molecular function 706 0.0
extracellular matrix Hs cellular component 706 0.0
MHC class II protein binding Hs molecular function 619 0.0
identical protein binding Hs molecular function 706 0.0
SMAD binding Hs molecular function 706 0.0
metal ion binding Hs molecular function 706 0.0
platelet-derived growth factor binding Hs molecular function 706 0.0
extracellular exosome Hs cellular component 706 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
extracellular matrix structural constituent Pfam molecular function 8.3E-84
protein binding SMART molecular function 4.3E-12

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