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GENE CARD

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Gene Card

Best human hits

COL12A1; COL14A1; MATN2

Species

C.savignyi

Unique Gene ID

Cisavi.g00001778

Gene Model ID

Cisavi.CG.ENS81.R13.2864018-2868213

Location

R13:2864017..2868213

Transcript Models and Sequences

  Cisavi.CG.ENS81.R13.2864018-2868213.15518.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
VWF_A SMART von Willebrand factor, type A
VWF_A Pfam von Willebrand factor, type A
vWFA_dom_sf Gene3D von Willebrand factor A-like domain superfamily
vWFA_dom_sf SUPERFAMILY von Willebrand factor A-like domain superfamily
VWF_A ProSiteProfiles von Willebrand factor, type A

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA binding Hs molecular function 126 7.56e-30
extracellular matrix structural constituent Hs molecular function 126 7.56e-30
calcium ion binding Hs molecular function 119 1.08e-27
protein binding Hs molecular function 135 1.39e-32
collagen binding Hs molecular function 126 7.56e-30
extracellular region Hs cellular component 135 1.39e-32
proteinaceous extracellular matrix Hs cellular component 135 1.39e-32
collagen trimer Hs cellular component 135 1.39e-32
collagen type XII trimer Hs cellular component 135 1.39e-32
collagen type XIV trimer Hs cellular component 126 7.56e-30
basement membrane Hs cellular component 119 1.08e-27
extracellular space Hs cellular component 135 1.39e-32
endoplasmic reticulum lumen Hs cellular component 135 1.39e-32
extracellular matrix structural constituent conferring tensile strength Hs molecular function 135 1.39e-32
protein binding, bridging Hs molecular function 126 7.56e-30
extracellular matrix Hs cellular component 135 1.39e-32
extracellular exosome Hs cellular component 135 1.39e-32
extracellular vesicle Hs cellular component 135 1.39e-32

GO (InterProScan)

No result

GO Term Analysis Type e-value