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Gene Card

Best human hits

GPS1; PSMD6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015272

Gene Model ID

KH2012:KH.S988.2

Location

KhS988:8982..12180

Transcript Models and Sequences

  KH2012:KH.S988.2.v1.A.nonSL3-1
KH2012:KH.S988.2.v1.A.nonSL4-1
KH2012:KH.S988.2.v1.A.nonSL5-1
KH2012:KH.S988.2.v1.A.nonSL7-1
KH2012:KH.S988.2.v1.A.nonSL8-1
KH2012:KH.S988.2.v1.A.SL6-1
KH2012:KH.S988.2.v1.R.ND2-1
KH2012:KH.S988.2.v2.A.nonSL3-1
KH2012:KH.S988.2.v2.A.nonSL4-1
KH2012:KH.S988.2.v2.A.nonSL5-1
KH2012:KH.S988.2.v2.A.nonSL7-1
KH2012:KH.S988.2.v2.A.nonSL8-1
KH2012:KH.S988.2.v2.A.SL6-1
KH2012:KH.S988.2.v2.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000004450
NCBI Reference Sequence XM_002130407.4
Collections

Gateway full ORF

4 results

cien87319

Plate: VES84_E02

cima87205

Plate: VES57_K08

cima839548

Plate: VES63_G14

cien139094

Plate: VES92_F02

Gene collection 1 (N. Satoh)

2 results

ciad016g08

Plate: R1CiGC02n19

ciad075a08

Plate: R1CiGC07m10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
PCI_dom Pfam Proteasome component (PCI) domain
PCI_dom SMART Proteasome component (PCI) domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
Rpn7/CSN1 Pfam 26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1
PSMD6 PANTHER 26S Proteasome non-ATPase regulatory subunit 6

GOSlim

39 results

GO Term Annotation Origin Type
protein polyubiquitination Orthology biological process
protein binding Orthology molecular function
extracellular region Orthology cellular component
nucleus Blast cellular component
nucleoplasm Orthology cellular component
cytoplasm Blast cellular component
cytosol Orthology cellular component
proteolysis Orthology biological process
enzyme regulator activity Orthology molecular function
regulation of catalytic activity Orthology biological process
transmembrane transport Orthology biological process
extracellular exosome Orthology cellular component
negative regulation of canonical Wnt signaling pathway Orthology biological process
positive regulation of canonical Wnt signaling pathway Orthology biological process
intracellular signal transduction Orthology biological process
protein phosphorylation Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
G2/M transition of mitotic cell cycle Orthology biological process
peptidase activity, acting on L-amino acid peptides Orthology molecular function
nucleoside-triphosphatase activity Orthology molecular function
cytokine-mediated signaling pathway Orthology biological process
intracellular organelle part Orthology cellular component
cytoplasmic vesicle Orthology cellular component
endomembrane system Orthology cellular component
intracellular organelle lumen Orthology cellular component
transcription factor activity, sequence-specific DNA binding Orthology molecular function
cell surface receptor signaling pathway Orthology biological process
immune response Orthology biological process
mRNA catabolic process Orthology biological process
cellular protein modification process Orthology biological process
cell-cell signaling Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
immune system process Orthology biological process
cell differentiation Orthology biological process
regulation of GTPase activity Blast biological process
GTPase regulator activity Blast molecular function
nuclear part Blast cellular component

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
MAPK cascade Hs biological process
protein polyubiquitination Hs biological process
proteasome complex Hs cellular component
protein binding Hs molecular function
extracellular region Hs cellular component
nucleoplasm Hs cellular component
cytosol Hs cellular component
proteasome regulatory particle Hs cellular component
proteolysis Hs biological process
negative regulation of G2/M transition of mitotic cell cycle Hs biological process
protein deubiquitination Hs biological process
ATPase activity Hs molecular function
proteasome accessory complex Hs cellular component
enzyme regulator activity Hs molecular function
anaphase-promoting complex-dependent catabolic process Hs biological process
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Hs biological process
tumor necrosis factor-mediated signaling pathway Hs biological process
secretory granule lumen Hs cellular component
NIK/NF-kappaB signaling Hs biological process
Fc-epsilon receptor signaling pathway Hs biological process
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
regulation of mRNA stability Hs biological process
post-translational protein modification Hs biological process
regulation of catalytic activity Hs biological process
T cell receptor signaling pathway Hs biological process
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Hs biological process
transmembrane transport Hs biological process
Wnt signaling pathway, planar cell polarity pathway Hs biological process
extracellular exosome Hs cellular component
interleukin-1-mediated signaling pathway Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
regulation of hematopoietic stem cell differentiation Hs biological process
ficolin-1-rich granule lumen Hs cellular component

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
proteasome complex Hs cellular component 535 0.0
GTPase inhibitor activity Hs molecular function 85.1 5.82e-18
protein binding Hs molecular function 535 0.0
extracellular region Hs cellular component 535 0.0
nucleus Hs cellular component 85.1 5.82e-18
nucleoplasm Hs cellular component 535 0.0
cytoplasm Hs cellular component 85.1 5.82e-18
cytosol Hs cellular component 535 0.0
proteasome regulatory particle Hs cellular component 535 0.0
COP9 signalosome Hs cellular component 85.1 5.82e-18
ATPase activity Hs molecular function 535 0.0
proteasome accessory complex Hs cellular component 535 0.0
enzyme regulator activity Hs molecular function 535 0.0
secretory granule lumen Hs cellular component 535 0.0
extracellular exosome Hs cellular component 535 0.0
ficolin-1-rich granule lumen Hs cellular component 535 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding SMART molecular function 6.1E-22
enzyme regulator activity PANTHER molecular function 4.6E-175

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