Aniseed - Gene card

Gene Card

Best human hits

ARPC1A; ARPC1B; CIAO1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015271

Gene Model ID

KH2012:KH.S988.1

Location

KhS988:12476..15548

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000004481
NCBI Reference Sequence	XM_002130147.4

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

cieg058l12

Plate: R1CiGC24j16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
WD40_repeat	ProSiteProfiles	WD40 repeat
WD40_repeat	Pfam	WD40 repeat
WD40_repeat	SMART	WD40 repeat
WD40_repeat_dom	ProSiteProfiles	WD40-repeat-containing domain
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily
ARPC1	PIRSF	Actin-related protein 2/3 complex subunit 1
ARPC1	PANTHER	Actin-related protein 2/3 complex subunit 1
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
Apc4_WD40_dom	Pfam	Anaphase-promoting complex subunit 4, WD40 domain

GOSlim

17 results

GO Term	Annotation Origin	Type
actin binding	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
focal adhesion	Orthology	cellular component
actin filament binding	Orthology	molecular function
membrane organization	Orthology	biological process
extracellular exosome	Orthology	cellular component
organelle organization	Orthology	biological process
structural molecule activity	Orthology	molecular function
cytoskeletal part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
response to lipid	Orthology	biological process
response to stimulus	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
microtubule cytoskeleton	Blast	cellular component

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
actin binding	Hs	molecular function
structural constituent of cytoskeleton	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
Arp2/3 protein complex	Hs	cellular component
focal adhesion	Hs	cellular component
actin cytoskeleton	Hs	cellular component
actin cytoskeleton organization	Hs	biological process
regulation of actin filament polymerization	Hs	biological process
response to estradiol	Hs	biological process
Arp2/3 complex-mediated actin nucleation	Hs	biological process
tubulobulbar complex	Hs	cellular component
response to estrogen	Hs	biological process
ephrin receptor signaling pathway	Hs	biological process
actin filament binding	Hs	molecular function
membrane organization	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
actin binding	Hs	molecular function	417	8.37e-146
structural constituent of cytoskeleton	Hs	molecular function	385	1.79e-133
protein binding	Hs	molecular function	417	8.37e-146
cytoplasm	Hs	cellular component	417	8.37e-146
cytosol	Hs	cellular component	417	8.37e-146
cytoskeleton	Hs	cellular component	417	8.37e-146
Arp2/3 protein complex	Hs	cellular component	417	8.37e-146
focal adhesion	Hs	cellular component	385	1.79e-133
actin cytoskeleton	Hs	cellular component	417	8.37e-146
tubulobulbar complex	Hs	cellular component	385	1.79e-133
actin filament binding	Hs	molecular function	417	8.37e-146
extracellular exosome	Hs	cellular component	417	8.37e-146
MMXD complex	Hs	cellular component	55.1	2.44e-08
CIA complex	Hs	cellular component	55.1	2.44e-08

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
protein binding	Gene3D	molecular function	2.4E-141
Arp2/3 protein complex	PANTHER	cellular component	5.6E-149
actin cytoskeleton	PANTHER	cellular component	5.6E-149
regulation of actin filament polymerization	PANTHER	biological process	5.6E-149
Arp2/3 complex-mediated actin nucleation	PANTHER	biological process	5.6E-149