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GENE CARD

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  1. Gene 'KH2012:KH.S852.2'

Gene Card

Best human hits

MEX3B; MEX3C; MEX3D

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015119

Gene Model ID

KH2012:KH.S852.2

Location

KhS852:7038..9782

Transcript Models and Sequences

  KH2012:KH.S852.2.v1.A.ND2-1
KH2012:KH.S852.2.v2.A.SL1-1
KH2012:KH.S852.2.v3.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000002603
Collections

Gateway full ORF

4 results

cien108290

Plate: VES87_M05

cien36527

Plate: VES76_H04

cien81684

Plate: VES83_O03

cien141483

Plate: VES92_O09

Gene collection 1 (N. Satoh)

2 results

cieg014n06

Plate: R1CiGC17n21

citb093m21

Plate: R1CiGC46d04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
Znf_RING ProSiteProfiles Zinc finger, RING-type
Znf_RING SMART Zinc finger, RING-type
KH_dom_type_1_sf Gene3D K Homology domain, type 1 superfamily
KH_dom_type_1_sf SUPERFAMILY K Homology domain, type 1 superfamily
KH_dom_type_1 Pfam K Homology domain, type 1
KH_dom SMART K Homology domain

GOSlim

18 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
calcium ion binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
protein phosphorylation Orthology biological process
transferase activity Orthology molecular function
protein autophosphorylation Orthology biological process
metal ion binding Orthology molecular function
perinuclear region of cytoplasm Orthology cellular component
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
regulation of gene expression Orthology biological process
mRNA catabolic process Orthology biological process

GO (Orthology)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
P-body Hs cellular component
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
calcium ion binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
protein phosphorylation Hs biological process
mRNA localization resulting in posttranscriptional regulation of gene expression Hs biological process
transferase activity Hs molecular function
AU-rich element binding Hs molecular function
protein autophosphorylation Hs biological process
metal ion binding Hs molecular function
perinuclear region of cytoplasm Hs cellular component
mRNA destabilization Hs biological process
energy homeostasis Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
P-body Hs cellular component 317 1.84e-102
nucleic acid binding Hs molecular function 330 2.52e-106
RNA binding Hs molecular function 330 2.52e-106
calcium ion binding Hs molecular function 317 1.84e-102
protein binding Hs molecular function 330 2.52e-106
nucleus Hs cellular component 330 2.52e-106
nucleoplasm Hs cellular component 317 1.84e-102
cytoplasm Hs cellular component 330 2.52e-106
cytosol Hs cellular component 317 1.84e-102
transferase activity Hs molecular function 330 2.52e-106
AU-rich element binding Hs molecular function 283 1.30e-88
metal ion binding Hs molecular function 330 2.52e-106
perinuclear region of cytoplasm Hs cellular component 283 1.30e-88

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 1.9E-16
RNA binding Gene3D molecular function 1.4E-21

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