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Gene Card

Best human hits

HOXA5; HOXB5; HOXC4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015020

Gene Model ID

KH2012:KH.S765.3

Location

KhS765:6427..8647

Transcript Models and Sequences

  KH2012:KH.S765.3.v1.A.SL1-1
KH2012:KH.S765.3.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001363
NCBI Reference Sequence NM_001032493.1
Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Homeobox_antennapedia PRINTS Homeobox protein, antennapedia type
Homeobox_metazoa PRINTS Homeobox domain, metazoa
Homeobox_Antennapedia_CS ProSitePatterns Homeobox protein, antennapedia type, conserved site
Homeobox_dom CDD Homeobox domain
Homeobox_dom Pfam Homeobox domain
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_dom SMART Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily

GOSlim

29 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytosol Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
anatomical structure morphogenesis Orthology biological process
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
nucleoplasm Orthology cellular component
centrosome Orthology cellular component
regulation of transcription from RNA polymerase II promoter Orthology biological process
cell proliferation Orthology biological process
nuclear body Orthology cellular component
cell junction Orthology cellular component
system development Orthology biological process
animal organ development Orthology biological process
immune system process Orthology biological process
cell division Orthology biological process
cell differentiation Orthology biological process
nucleolus Blast cellular component

GO (Orthology)

35 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
skeletal system development Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
anatomical structure morphogenesis Hs biological process
anterior/posterior pattern specification Hs biological process
sequence-specific DNA binding Hs molecular function
positive regulation of transcription from RNA polymerase II promoter Hs biological process
embryonic organ morphogenesis Hs biological process
cartilage development Hs biological process
HMG box domain binding Hs molecular function
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
morphogenesis of an epithelial sheet Hs biological process
nucleoplasm Hs cellular component
centrosome Hs cellular component
regulation of transcription from RNA polymerase II promoter Hs biological process
cell proliferation Hs biological process
nuclear body Hs cellular component
cell junction Hs cellular component
hemopoiesis Hs biological process
somatic stem cell division Hs biological process
skeletal system morphogenesis Hs biological process
definitive hemopoiesis Hs biological process
hematopoietic stem cell differentiation Hs biological process
positive regulation of stem cell differentiation Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 140 3.56e-41
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 142 1.41e-41
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 142 1.41e-41
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 140 3.56e-41
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 142 1.41e-41
fibrillar center Hs cellular component 142 1.41e-41
DNA binding Hs molecular function 142 1.41e-41
transcription factor activity, sequence-specific DNA binding Hs molecular function 142 1.41e-41
protein binding Hs molecular function 142 1.41e-41
nucleus Hs cellular component 142 1.41e-41
cytosol Hs cellular component 142 1.41e-41
sequence-specific DNA binding Hs molecular function 142 1.41e-41
HMG box domain binding Hs molecular function 139 1.45e-40

GO (InterProScan)

5 results

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 6.84E-27
transcription factor activity, sequence-specific DNA binding PRINTS molecular function 4.3E-6
nucleus PRINTS cellular component 4.3E-6
regulation of transcription, DNA-templated PRINTS biological process 4.3E-6
sequence-specific DNA binding ProSitePatterns molecular function

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