Aniseed - Gene card

Gene 'KH2012:KH.S605.3'

Gene Card

Best human hits

CRYBB2; CRYGN; CRYGS

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014792

Gene Model ID

KH2012:KH.S605.3

Location

KhS605:17727..18658

Transcript Models and Sequences

KH2012:KH.S605.3.v1.A.ND1-1
KH2012:KH.S605.3.v1.A.nonSL2-1
KH2012:KH.S605.3.v1.A.nonSL3-1
KH2012:KH.S605.3.v1.A.nonSL4-1
KH2012:KH.S605.3.v1.A.nonSL5-1
KH2012:KH.S605.3.v1.A.nonSL6-1
KH2012:KH.S605.3.v1.A.nonSL7-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000000732
NCBI Reference Sequence	XM_002126852.3

Collections

Gene collection 1 (N. Satoh)

1 result

cilv010f04

Plate: R1CiGC25f12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

17 results

Ci- beta gamma Crystallin -974/1 REG00000173 [ regulatory_region (extended_promoter) ]

Cirobu.REG.KH2012.S605:16609-17833|βγ-crystallin REG00001389 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.S605:16789-17833|βγ-crystallin REG00001202 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.S605:16809-17833|βγ-crystallin REG00001390 [ regulatory_region (extended_promoter) ]
  - Cirobu.REG.KH2012.S605:17009-17833|βγ-crystallin REG00001391 [ regulatory_region (extended_promoter) ]
    - Cirobu.REG.KH2012.S605:17209-17833|βγ-crystallin REG00001392 [ regulatory_region (extended_promoter) ]
      - Cirobu.REG.KH2012.S605:17409-17833|βγ-crystallin REG00001393 [ regulatory_region (extended_promoter) ]
        
        Cirobu.REG.KH2012.S605:17448-17833|βγ-crystallin REG00001394 [ regulatory_region (extended_promoter) ]
        
        Cirobu.REG.KH2012.S605:17471-17833|βγ-crystallin REG00001395 [ regulatory_region (extended_promoter) ]
        
        Cirobu.REG.KH2012.S605:17540-17833|βγ-crystallin REG00001396 [ regulatory_region (extended_promoter) ]
        
        Cirobu.REG.KH2012.S605:17549-17833|βγ-crystallin REG00001397 [ no_output ]
        
        Cirobu.REG.KH2012.S605:17609-17833|βγ-crystallin REG00001398 [ no_output ]
        
        Cirobu.REG.KH2012.S605:17448-17833_SoxMut|βγ-crystallin REG00001399 [ regulatory_region (extended_promoter) ]
        
        Cirobu.REG.KH2012.S605:17448-17833_Cdx1Mut|βγ-crystallin REG00001400 [ regulatory_region (extended_promoter) ]
        
        Cirobu.REG.KH2012.S605:17448-17833_Cdx1-2Mut|βγ-crystallin REG00001401 [ inactive_region ]
        
        Cirobu.REG.KH2012.S605:17448-17833_FoxMut|βγ-crystallin REG00001402 [ regulatory_region (extended_promoter) ]
        
        Cirobu.REG.KH2012.S605:17448-17833_CREBmut|βγ-crystallin REG00001403 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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No Phylogeny Tree for this Gene.

Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Beta/gamma_crystallin	ProSiteProfiles	Beta/gamma crystallin
Beta/gamma_crystallin	SMART	Beta/gamma crystallin
G_crystallin-like	SUPERFAMILY	Gamma-crystallin-like
Beta/gamma_crystallin	Pfam	Beta/gamma crystallin

GOSlim

4 results

GO Term	Annotation Origin	Type
structural molecule activity	Blast	molecular function
protein binding	Blast	molecular function
identical protein binding	Blast	molecular function
protein homodimerization activity	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

5 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
structural molecule activity	Hs	molecular function	59.3	2.10e-12
structural constituent of eye lens	Hs	molecular function	60.1	8.41e-13
protein binding	Hs	molecular function	60.1	8.41e-13
identical protein binding	Hs	molecular function	59.3	2.10e-12
protein homodimerization activity	Hs	molecular function	59.3	2.10e-12

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value