Aniseed - Gene card

GENE CARD

Submit your Data

>
>
>
>

Gene Card

Best human hits

ZKSCAN8; ZNF570; ZNF79

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014528

Gene Model ID

KH2012:KH.S437.3

Location

KhS437:12363..14668

Transcript Models and Sequences

KH2012:KH.S437.3.v1.A.SL1-1
KH2012:KH.S437.3.v2.A.nonSL5-1
KH2012:KH.S437.3.v2.A.nonSL7-1
KH2012:KH.S437.3.v2.A.SL12-1
KH2012:KH.S437.3.v2.A.SL2-1
KH2012:KH.S437.3.v3.A.ND3-1
KH2012:KH.S437.3.v3.A.nonSL10-1
KH2012:KH.S437.3.v3.A.nonSL11-1
KH2012:KH.S437.3.v3.A.nonSL13-1
KH2012:KH.S437.3.v3.A.nonSL14-1
KH2012:KH.S437.3.v3.A.nonSL15-1
KH2012:KH.S437.3.v3.A.nonSL16-1
KH2012:KH.S437.3.v3.A.nonSL17-1
KH2012:KH.S437.3.v3.A.nonSL19-1
KH2012:KH.S437.3.v3.A.nonSL20-1
KH2012:KH.S437.3.v3.A.nonSL21-1
KH2012:KH.S437.3.v3.A.nonSL22-1
KH2012:KH.S437.3.v3.A.nonSL4-1
KH2012:KH.S437.3.v3.A.nonSL6-1
KH2012:KH.S437.3.v3.A.nonSL8-1
KH2012:KH.S437.3.v3.A.nonSL9-1
KH2012:KH.S437.3.v3.A.SL18-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000003015
NCBI Reference Sequence	NM_001078388.1
NCBI Reference Sequence	XM_009862657.2

Collections

Gateway full ORF

4 results

cien61400

Plate: VES79_L22

cima829610

Plate: VES61_D18

cien167378

Plate: VES96_E04

cien228102

Plate: VES105_E11

Gene collection 1 (N. Satoh)

1 result

cicl045c22

Plate: R1CiGC13g09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	SMART	Zinc finger C2H2-type

GOSlim

7 results

GO Term	Annotation Origin	Type
nucleic acid binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
intracellular	Blast	cellular component
nucleus	Blast	cellular component
metal ion binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

7 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	178	2.00e-50
DNA binding	Hs	molecular function	178	2.00e-50
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	178	2.00e-50
protein binding	Hs	molecular function	167	6.75e-47
intracellular	Hs	cellular component	178	2.00e-50
nucleus	Hs	cellular component	178	2.00e-50
metal ion binding	Hs	molecular function	178	2.00e-50

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	1.6E-5

Back to Top