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  2. Gene 'KH2012:KH.L18.20' > 
  3. Gene 'KH2012:KH.S654.1' > 

Gene Card

Best human hits

ITGB1; ITGB5; ITGB6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014402

Gene Model ID

KH2012:KH.S390.6

Location

KhS390:39484..48164

Transcript Models and Sequences

  KH2012:KH.S390.6.v1.A.SL2-1
KH2012:KH.S390.6.v2.A.SL1-1
KH2012:KH.S390.6.v3.A.SL3-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000006316
NCBI Reference Sequence XM_009862184.2
NCBI Reference Sequence XM_018816916.1
Collections

Gateway full ORF

3 results

cima874340

Plate: VES67_B11

cima887924

Plate: VES70_P04

cien210934

Plate: VES103_A01

Gene collection 1 (N. Satoh)

1 result

cilv006p03

Plate: R1CiGC25d07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
Integrin_bsu PIRSF Integrin beta subunit
Integrin_bsu_cyt_dom Pfam Integrin beta subunit, cytoplasmic domain
vWFA_dom_sf Gene3D von Willebrand factor A-like domain superfamily
Integrin_bsu_VWA Pfam Integrin beta subunit, VWA domain
vWFA_dom_sf SUPERFAMILY von Willebrand factor A-like domain superfamily
Integrin_bsu_cyt_dom SMART Integrin beta subunit, cytoplasmic domain
Integrin_bsu_VWA SMART Integrin beta subunit, VWA domain
Integrin_bsu ProSitePatterns Integrin beta subunit
Integrin_bsu PRINTS Integrin beta subunit
Integrin_bsu PANTHER Integrin beta subunit
Integrin_dom_sf SUPERFAMILY Integrin domain superfamily

GOSlim

39 results

GO Term Annotation Origin Type
actin binding Blast molecular function
integrin binding Blast molecular function
protein binding Blast molecular function
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
endosome Blast cellular component
centrosome Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
cell adhesion Blast biological process
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
lamellipodium Blast cellular component
cell junction Blast cellular component
cytoplasmic vesicle Blast cellular component
melanosome Blast cellular component
cell projection Blast cellular component
macromolecular complex binding Blast molecular function
membrane raft Blast cellular component
synapse Blast cellular component
metal ion binding Blast molecular function
protein heterodimerization activity Blast molecular function
perinuclear region of cytoplasm Blast cellular component
cell adhesion molecule binding Blast molecular function
extracellular exosome Blast cellular component
synaptic membrane Blast cellular component
binding Blast molecular function
plasma membrane region Blast cellular component
cell leading edge Blast cellular component
enzyme binding Blast molecular function
integral component of plasma membrane Blast cellular component
macromolecular complex Blast cellular component
plasma membrane part Blast cellular component
signaling receptor activity Blast molecular function
cytoskeletal part Blast cellular component
cell projection membrane Blast cellular component
myelin sheath Blast cellular component
postsynapse Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

59 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
virus receptor activity Hs molecular function 465 3.74e-152
ruffle Hs cellular component 465 3.74e-152
fibronectin binding Hs molecular function 465 3.74e-152
protease binding Hs molecular function 465 3.74e-152
actin binding Hs molecular function 465 3.74e-152
receptor activity Hs molecular function 465 3.74e-152
integrin binding Hs molecular function 465 3.74e-152
protein binding Hs molecular function 465 3.74e-152
nucleoplasm Hs cellular component 441 8.94e-143
cytoplasm Hs cellular component 465 3.74e-152
endosome Hs cellular component 465 3.74e-152
centrosome Hs cellular component 441 8.94e-143
plasma membrane Hs cellular component 465 3.74e-152
focal adhesion Hs cellular component 465 3.74e-152
integrin complex Hs cellular component 465 3.74e-152
external side of plasma membrane Hs cellular component 465 3.74e-152
cell surface Hs cellular component 465 3.74e-152
intercalated disc Hs cellular component 465 3.74e-152
coreceptor activity Hs molecular function 465 3.74e-152
membrane Hs cellular component 465 3.74e-152
integral component of membrane Hs cellular component 465 3.74e-152
C-X3-C chemokine binding Hs molecular function 465 3.74e-152
lamellipodium Hs cellular component 465 3.74e-152
cell junction Hs cellular component 465 3.74e-152
filopodium Hs cellular component 465 3.74e-152
cytoplasmic vesicle Hs cellular component 465 3.74e-152
neuromuscular junction Hs cellular component 465 3.74e-152
cleavage furrow Hs cellular component 465 3.74e-152
ruffle membrane Hs cellular component 465 3.74e-152
integrin alpha1-beta1 complex Hs cellular component 465 3.74e-152
integrin alpha2-beta1 complex Hs cellular component 465 3.74e-152
integrin alpha3-beta1 complex Hs cellular component 465 3.74e-152
integrin alpha7-beta1 complex Hs cellular component 465 3.74e-152
integrin alpha8-beta1 complex Hs cellular component 465 3.74e-152
integrin alpha10-beta1 complex Hs cellular component 465 3.74e-152
integrin alpha11-beta1 complex Hs cellular component 465 3.74e-152
integrin alphav-beta5 complex Hs cellular component 444 8.56e-144
integrin alphav-beta6 complex Hs cellular component 441 8.94e-143
myelin sheath abaxonal region Hs cellular component 465 3.74e-152
sarcolemma Hs cellular component 465 3.74e-152
melanosome Hs cellular component 465 3.74e-152
cell projection Hs cellular component 465 3.74e-152
dendritic spine Hs cellular component 465 3.74e-152
receptor complex Hs cellular component 465 3.74e-152
laminin binding Hs molecular function 465 3.74e-152
macromolecular complex binding Hs molecular function 465 3.74e-152
membrane raft Hs cellular component 465 3.74e-152
synapse Hs cellular component 465 3.74e-152
cadherin binding Hs molecular function 465 3.74e-152
phagocytic vesicle Hs cellular component 444 8.56e-144
metal ion binding Hs molecular function 465 3.74e-152
protein heterodimerization activity Hs molecular function 465 3.74e-152
perinuclear region of cytoplasm Hs cellular component 465 3.74e-152
cell adhesion molecule binding Hs molecular function 465 3.74e-152
recycling endosome Hs cellular component 465 3.74e-152
extracellular exosome Hs cellular component 465 3.74e-152
invadopodium membrane Hs cellular component 465 3.74e-152
synaptic membrane Hs cellular component 465 3.74e-152
collagen binding involved in cell-matrix adhesion Hs molecular function 465 3.74e-152

GO (InterProScan)

No result

GO Term Analysis Type e-value

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