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GENE CARD

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Gene Card

Best human hits

PBX1; PBX2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014220

Gene Model ID

KH2012:KH.S215.9

Location

KhS215:51769..63249

Transcript Models and Sequences

  KH2012:KH.S215.9.v1.A.SL1-1
KH2012:KH.S215.9.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000009075
NCBI Reference Sequence NM_001078535.1
Collections

Gateway full ORF

2 results

cien102258

Plate: VES86_C06

cien143758

Plate: VES92_C18

Gene collection 1 (N. Satoh)

1 result

cilv008a08

Plate: R1CiGC25j13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom SMART Homeobox domain
Homeobox_dom CDD Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom Pfam Homeobox domain
PBX Pfam PBX

GOSlim

41 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
transcription factor binding Orthology molecular function
positive regulation of cell proliferation Orthology biological process
cell differentiation Orthology biological process
regulation of cell proliferation Orthology biological process
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
chromatin binding Orthology molecular function
regulation of transcription from RNA polymerase II promoter Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
neuron development Orthology biological process
system development Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
Notch signaling pathway Orthology biological process
developmental process Orthology biological process
reproductive process Orthology biological process
G2/M transition of mitotic cell cycle Orthology biological process
immune system process Orthology biological process
cell development Orthology biological process
neuron differentiation Orthology biological process
nuclear part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
central nervous system development Orthology biological process

GO (Orthology)

51 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
urogenital system development Hs biological process
branching involved in ureteric bud morphogenesis Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
steroid biosynthetic process Hs biological process
positive regulation of transcription of Notch receptor target Hs biological process
multicellular organism development Hs biological process
sex differentiation Hs biological process
transcription factor binding Hs molecular function
positive regulation of cell proliferation Hs biological process
animal organ morphogenesis Hs biological process
anterior/posterior pattern specification Hs biological process
proximal/distal pattern formation Hs biological process
positive regulation of G2/M transition of mitotic cell cycle Hs biological process
cell differentiation Hs biological process
regulation of ossification Hs biological process
adrenal gland development Hs biological process
embryonic limb morphogenesis Hs biological process
somatic stem cell population maintenance Hs biological process
embryonic hemopoiesis Hs biological process
regulation of cell proliferation Hs biological process
sequence-specific DNA binding Hs molecular function
negative regulation of neuron differentiation Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function
thymus development Hs biological process
embryonic organ development Hs biological process
embryonic skeletal system development Hs biological process
RNA polymerase II transcription factor complex Hs cellular component
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
XY body Hs cellular component
chromatin binding Hs molecular function
regulation of transcription from RNA polymerase II promoter Hs biological process
adult locomotory behavior Hs biological process
dorsal spinal cord development Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
neuron development Hs biological process

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 451 3.54e-158
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 451 3.54e-158
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 451 3.54e-158
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 451 3.54e-158
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 441 5.84e-154
DNA binding Hs molecular function 451 3.54e-158
transcription factor activity, sequence-specific DNA binding Hs molecular function 451 3.54e-158
protein binding Hs molecular function 451 3.54e-158
nucleus Hs cellular component 451 3.54e-158
nucleoplasm Hs cellular component 451 3.54e-158
transcription factor complex Hs cellular component 451 3.54e-158
cytoplasm Hs cellular component 451 3.54e-158
transcription factor binding Hs molecular function 441 5.84e-154
sequence-specific DNA binding Hs molecular function 451 3.54e-158
protein heterodimerization activity Hs molecular function 451 3.54e-158
RNA polymerase II transcription factor complex Hs cellular component 451 3.54e-158

GO (InterProScan)

5 results

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 8.55E-20
transcription factor activity, sequence-specific DNA binding Pfam molecular function 3.4E-87
nucleus Pfam cellular component 3.4E-87
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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