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Gene Card

Best human hits

SP2; SP3; SP4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014211

Gene Model ID

KH2012:KH.S215.22

Location

KhS215:8311..17401

Transcript Models and Sequences

  KH2012:KH.S215.22.v1.A.SL1-1
KH2012:KH.S215.22.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000019150
NCBI Reference Sequence NM_001129852.1
NCBI Reference Sequence XM_009861439.2
Collections

Gateway full ORF

4 results

cien39733

Plate: VES76_P15

cien62951

Plate: VES80_C05

cima811584

Plate: VES58_K05

cien227623

Plate: VES105_L09

Gene collection 1 (N. Satoh)

1 result

cieg014o20

Plate: R1CiGC17b02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type SMART Zinc finger C2H2-type
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type

GOSlim

63 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
core promoter proximal region sequence-specific DNA binding Blast molecular function
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
double-stranded DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Blast molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytosol Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
transcription regulatory region sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
response to hypoxia Orthology biological process
cytoplasm Orthology cellular component
transcription from RNA polymerase II promoter Orthology biological process
brain development Orthology biological process
zinc ion binding Orthology molecular function
positive regulation of cell proliferation Orthology biological process
positive regulation of gene expression Orthology biological process
transferase activity Orthology molecular function
ubiquitin protein ligase binding Orthology molecular function
regulation of apoptotic process Orthology biological process
negative regulation of apoptotic process Orthology biological process
intracellular membrane-bounded organelle Orthology cellular component
transcription regulatory region DNA binding Orthology molecular function
cellular response to organic substance Orthology biological process
negative regulation of canonical Wnt signaling pathway Orthology biological process
protein modification by small protein conjugation Orthology biological process
immune system process Orthology biological process
animal organ development Orthology biological process
cell differentiation Orthology biological process
transcription factor binding Orthology molecular function
cell migration Orthology biological process
angiogenesis Orthology biological process
response to stress Orthology biological process
intracellular protein transport Orthology biological process
chemical synaptic transmission Orthology biological process
nervous system development Orthology biological process
nervous system process Orthology biological process
axon guidance Orthology biological process
response to organic substance Orthology biological process
neurogenesis Orthology biological process
cell surface receptor signaling pathway Orthology biological process
enzyme binding Orthology molecular function
chemotaxis Orthology biological process
cellular process Orthology biological process
regulation of signaling Orthology biological process
cytokine-mediated signaling pathway Orthology biological process
positive regulation of cell death Orthology biological process
nuclear body Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

71 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
protein sumoylation Hs biological process
T cell differentiation Hs biological process
sequence-specific DNA binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
transcription regulatory region sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
RNA polymerase II activating transcription factor binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
response to hypoxia Hs biological process
positive regulation of endothelial cell proliferation Hs biological process
cell migration involved in sprouting angiogenesis Hs biological process
response to ischemia Hs biological process
cytoplasm Hs cellular component
transcription from RNA polymerase II promoter Hs biological process
protein export from nucleus Hs biological process
neuromuscular synaptic transmission Hs biological process
brain development Hs biological process
peripheral nervous system development Hs biological process
muscle organ development Hs biological process
learning or memory Hs biological process
rhythmic behavior Hs biological process
circadian rhythm Hs biological process
motor neuron axon guidance Hs biological process
zinc ion binding Hs molecular function
positive regulation of cell proliferation Hs biological process
response to glucose Hs biological process
double-stranded methylated DNA binding Hs molecular function
positive regulation of gene expression Hs biological process
Schwann cell differentiation Hs biological process
transferase activity Hs molecular function
regulation of ossification Hs biological process
BMP signaling pathway Hs biological process
ubiquitin protein ligase binding Hs molecular function
response to insulin Hs biological process
histone acetyltransferase binding Hs molecular function
brain segmentation Hs biological process
endothelial cell chemotaxis Hs biological process
skeletal muscle cell differentiation Hs biological process
cellular response to vascular endothelial growth factor stimulus Hs biological process
myelination Hs biological process
regulation of apoptotic process Hs biological process
negative regulation of apoptotic process Hs biological process
intracellular membrane-bounded organelle Hs cellular component
transcription regulatory region DNA binding Hs molecular function
hemi-methylated DNA-binding Hs molecular function
fat cell differentiation Hs biological process
regulation of neuronal synaptic plasticity Hs biological process
interleukin-1-mediated signaling pathway Hs biological process
cellular response to organic substance Hs biological process
cellular response to gamma radiation Hs biological process
HMG box domain binding Hs molecular function
negative regulation of canonical Wnt signaling pathway Hs biological process
positive regulation of neuron death Hs biological process
promoter-specific chromatin binding Hs molecular function

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 141 1.71e-36
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 141 1.71e-36
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 150 6.85e-40
core promoter proximal region sequence-specific DNA binding Hs molecular function 141 1.71e-36
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 141 1.71e-36
nucleic acid binding Hs molecular function 150 6.85e-40
DNA binding Hs molecular function 150 6.85e-40
chromatin binding Hs molecular function 141 1.71e-36
double-stranded DNA binding Hs molecular function 141 1.71e-36
transcription factor activity, sequence-specific DNA binding Hs molecular function 150 6.85e-40
transcription coactivator activity Hs molecular function 150 6.85e-40
protein binding Hs molecular function 150 6.85e-40
nucleus Hs cellular component 150 6.85e-40
nucleoplasm Hs cellular component 150 6.85e-40
cytosol Hs cellular component 150 6.85e-40
PML body Hs cellular component 141 1.71e-36
transcriptional repressor complex Hs cellular component 141 1.71e-36
protein-DNA complex Hs cellular component 141 1.71e-36
histone deacetylase binding Hs molecular function 140 2.13e-36
sequence-specific DNA binding Hs molecular function 150 6.85e-40
metal ion binding Hs molecular function 150 6.85e-40

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 4.8E-4

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