Aniseed - Gene card

Gene Card

Best human hits

EIF2A; EIF3B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013885

Gene Model ID

KH2012:KH.S1454.1

Location

KhS1454:2460..9973

Transcript Models and Sequences

KH2012:KH.S1454.1.v1.A.nonSL4-1
KH2012:KH.S1454.1.v1.A.SL1-1
KH2012:KH.S1454.1.v1.A.SL3-1
KH2012:KH.S1454.1.v2.B.ND2-1
KH2012:KH.S1454.1.v3.A.nonSL4-1
KH2012:KH.S1454.1.v3.A.SL1-1
KH2012:KH.S1454.1.v3.A.SL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
NCBI Reference Sequence	XM_002129306.1
NCBI Reference Sequence	XM_009860449.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl050g12

Plate: R1CiGC13j08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
TIF2A	PIRSF	Translation initiation factor 2A
TIF_beta_prop-like	Pfam	Translation initiation factor, beta propellor-like domain
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily

GOSlim

20 results

GO Term	Annotation Origin	Type
nucleic acid binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular space	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
translational initiation	Orthology	biological process
protein phosphorylation	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
extracellular exosome	Blast	cellular component
regulation of gene expression	Orthology	biological process
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
ribosome	Orthology	cellular component
signal transduction	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
cellular response to stress	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
cell adhesion molecule binding	Orthology	molecular function

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
tRNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
translation initiation factor activity	Hs	molecular function
protein binding	Hs	molecular function
extracellular space	Hs	cellular component
cytoplasm	Hs	cellular component
eukaryotic translation initiation factor 2 complex	Hs	cellular component
translation	Hs	biological process
translational initiation	Hs	biological process
regulation of translation	Hs	biological process
protein phosphorylation	Hs	biological process
positive regulation of signal transduction	Hs	biological process
cytosolic small ribosomal subunit	Hs	cellular component
SREBP signaling pathway	Hs	biological process
ribosome assembly	Hs	biological process
ribosome binding	Hs	molecular function
cadherin binding	Hs	molecular function
blood microparticle	Hs	cellular component

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
tRNA binding	Hs	molecular function	434	1.65e-146
nucleic acid binding	Hs	molecular function	79.3	2.43e-15
RNA binding	Hs	molecular function	79.3	2.43e-15
mRNA binding	Hs	molecular function	434	1.65e-146
translation initiation factor activity	Hs	molecular function	434	1.65e-146
protein binding	Hs	molecular function	434	1.65e-146
extracellular space	Hs	cellular component	434	1.65e-146
cytoplasm	Hs	cellular component	434	1.65e-146
cytosol	Hs	cellular component	79.3	2.43e-15
eukaryotic translation initiation factor 2 complex	Hs	cellular component	434	1.65e-146
eukaryotic translation initiation factor 3 complex	Hs	cellular component	79.3	2.43e-15
eukaryotic 43S preinitiation complex	Hs	cellular component	79.3	2.43e-15
cytosolic small ribosomal subunit	Hs	cellular component	434	1.65e-146
translation initiation factor binding	Hs	molecular function	79.3	2.43e-15
protein complex scaffold activity	Hs	molecular function	79.3	2.43e-15
eukaryotic 48S preinitiation complex	Hs	cellular component	79.3	2.43e-15
ribosome binding	Hs	molecular function	434	1.65e-146
cadherin binding	Hs	molecular function	434	1.65e-146
extracellular exosome	Hs	cellular component	79.3	2.43e-15
eukaryotic translation initiation factor 3 complex, eIF3m	Hs	cellular component	79.3	2.43e-15
blood microparticle	Hs	cellular component	434	1.65e-146

GO (InterProScan)