Aniseed - Gene card

Gene 'KH2012:KH.S1029.2'

Gene Card

Best human hits

AP4B1; COPG1; COPG2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013515

Gene Model ID

KH2012:KH.S1029.2

Location

KhS1029:0..7236

Transcript Models and Sequences

KH2012:KH.S1029.2.v1.B.nonSL2-1
KH2012:KH.S1029.2.v1.B.nonSL3-1
KH2012:KH.S1029.2.v1.B.nonSL4-1
KH2012:KH.S1029.2.v1.B.nonSL6-1
KH2012:KH.S1029.2.v1.B.SL1-1
KH2012:KH.S1029.2.v2.B.SL5-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000007307

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg011d06

Plate: R1CiGC17e18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
ARM-like	Gene3D	Armadillo-like helical
Coatomer_gsu	PANTHER	Coatomer gamma subunit
ARM-type_fold	SUPERFAMILY	Armadillo-type fold
Clathrin/coatomer_adapt-like_N	Pfam	Clathrin/coatomer adaptor, adaptin-like, N-terminal

GOSlim

24 results

GO Term	Annotation Origin	Type
Golgi membrane	Orthology	cellular component
structural molecule activity	Orthology	molecular function
binding	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
cytosol	Orthology	cellular component
intracellular protein transport	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
intracellular transport	Orthology	biological process
cytoplasmic part	Orthology	cellular component
membrane part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
whole membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
Golgi apparatus part	Orthology	cellular component
endomembrane system	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
microtubule-based movement	Orthology	biological process
endosome	Blast	cellular component
intracellular organelle lumen	Blast	cellular component

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
Golgi membrane	Hs	cellular component
structural molecule activity	Hs	molecular function
binding	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
Golgi apparatus	Hs	cellular component
cytosol	Hs	cellular component
intracellular protein transport	Hs	biological process
ER to Golgi vesicle-mediated transport	Hs	biological process
retrograde vesicle-mediated transport, Golgi to ER	Hs	biological process
intra-Golgi vesicle-mediated transport	Hs	biological process
protein transport	Hs	biological process
membrane	Hs	cellular component
vesicle-mediated transport	Hs	biological process
membrane coat	Hs	cellular component
COPI vesicle coat	Hs	cellular component
transport vesicle	Hs	cellular component
COPI-coated vesicle membrane	Hs	cellular component
cytoplasmic vesicle	Hs	cellular component
establishment of Golgi localization	Hs	biological process
organelle transport along microtubule	Hs	biological process

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	909	0.0
structural molecule activity	Hs	molecular function	909	0.0
binding	Hs	molecular function	909	0.0
protein binding	Hs	molecular function	900	0.0
cytoplasm	Hs	cellular component	909	0.0
endoplasmic reticulum membrane	Hs	cellular component	909	0.0
Golgi apparatus	Hs	cellular component	909	0.0
trans-Golgi network	Hs	cellular component	52.4	6.39e-07
cytosol	Hs	cellular component	909	0.0
membrane	Hs	cellular component	909	0.0
extrinsic component of membrane	Hs	cellular component	52.4	6.39e-07
membrane coat	Hs	cellular component	909	0.0
AP-4 adaptor complex	Hs	cellular component	52.4	6.39e-07
COPI vesicle coat	Hs	cellular component	909	0.0
clathrin adaptor complex	Hs	cellular component	52.4	6.39e-07
transport vesicle	Hs	cellular component	909	0.0
clathrin binding	Hs	molecular function	52.4	6.39e-07
COPI-coated vesicle membrane	Hs	cellular component	909	0.0
cytoplasmic vesicle	Hs	cellular component	909	0.0
endosome lumen	Hs	cellular component	52.4	6.39e-07
trans-Golgi network membrane	Hs	cellular component	52.4	6.39e-07

GO (InterProScan)