Aniseed - Gene card

Gene Card

Best human hits

ATF7IP; ZCCHC8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013454

Gene Model ID

KH2012:KH.L97.3

Location

KhL97:89821..97956

Transcript Models and Sequences

KH2012:KH.L97.3.v1.B.SL2-1
KH2012:KH.L97.3.v2.B.SL1-1
KH2012:KH.L97.3.v2.B.SL3-1
KH2012:KH.L97.3.v3.B.SL1-1
KH2012:KH.L97.3.v3.B.SL3-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000016051

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

cieg053j10

Plate: R1CiGC24e03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
PSP_pro-rich	SMART	PSP, proline-rich
PSP_pro-rich	Pfam	PSP, proline-rich
Znf_CCHC	ProSiteProfiles	Zinc finger, CCHC-type

GOSlim

17 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
transcription corepressor activity	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Blast	cellular component
mRNA processing	Orthology	biological process
zinc ion binding	Orthology	molecular function
RNA splicing	Orthology	biological process
nuclear body	Orthology	cellular component
metal ion binding	Orthology	molecular function
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular part	Blast	cellular component
nucleoside-triphosphatase activity	Blast	molecular function

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
mRNA processing	Hs	biological process
zinc ion binding	Hs	molecular function
RNA splicing	Hs	biological process
nuclear body	Hs	cellular component
metal ion binding	Hs	molecular function
catalytic step 2 spliceosome	Hs	cellular component

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	176	2.24e-47
transcription corepressor activity	Hs	molecular function	41.2	0.002
RNA binding	Hs	molecular function	176	2.24e-47
protein binding	Hs	molecular function	176	2.24e-47
nucleus	Hs	cellular component	176	2.24e-47
nucleoplasm	Hs	cellular component	176	2.24e-47
transcription factor complex	Hs	cellular component	41.2	0.002
spliceosomal complex	Hs	cellular component	176	2.24e-47
cytosol	Hs	cellular component	41.2	0.002
zinc ion binding	Hs	molecular function	176	2.24e-47
nuclear body	Hs	cellular component	176	2.24e-47
ATPase activity	Hs	molecular function	41.2	0.002
metal ion binding	Hs	molecular function	176	2.24e-47
catalytic step 2 spliceosome	Hs	cellular component	176	2.24e-47

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	ProSiteProfiles	molecular function	9.125
zinc ion binding	ProSiteProfiles	molecular function	9.125