Aniseed - Gene card

Gene Card

Best human hits

CRELD1; CRELD2; HMCN1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013359

Gene Model ID

KH2012:KH.L96.18

Location

KhL96:582530..586312

Transcript Models and Sequences

KH2012:KH.L96.18.v1.A.SL1-1
KH2012:KH.L96.18.v1.A.SL2-1
KH2012:KH.L96.18.v2.A.SL1-1
KH2012:KH.L96.18.v2.A.SL2-1

External Database Gene Card

External database links

8 results

Database	Gene ID
ENSEMBL	ENSCING00000008688
NCBI Reference Sequence	XM_002131028.4
NCBI Reference Sequence	XM_009863615.2
NCBI Reference Sequence	XM_009863616.2
NCBI Reference Sequence	XM_009863617.2
NCBI Reference Sequence	XM_009863618.2
NCBI Reference Sequence	XM_009863619.2
NCBI Reference Sequence	XM_018816391.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg049l03

Plate: R1CiGC23f11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
EGF_Ca-bd_CS	ProSitePatterns	EGF-like calcium-binding, conserved site
EGF-like_dom	ProSiteProfiles	EGF-like domain
Furin_repeat	SMART	Furin-like repeat
EGF-type_Asp/Asn_hydroxyl_site	ProSitePatterns	EGF-type aspartate/asparagine hydroxylation site
EGF-like_Ca-bd_dom	SMART	EGF-like calcium-binding domain
EGF-like_Ca-bd_dom	Pfam	EGF-like calcium-binding domain
EGF-like_dom	SMART	EGF-like domain
EGF-like_CS	ProSitePatterns	EGF-like, conserved site
DUF3456	Pfam	Domain of unknown function DUF3456
Growth_fac_rcpt_cys_sf	SUPERFAMILY	Growth factor receptor cysteine-rich domain superfamily
Laminin_EGF	ProSitePatterns	Laminin EGF domain

GOSlim

16 results

GO Term	Annotation Origin	Type
calcium ion binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular region	Orthology	cellular component
extracellular space	Orthology	cellular component
cytoplasm	Blast	cellular component
endoplasmic reticulum	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
cell junction	Blast	cellular component
extracellular exosome	Blast	cellular component
heart development	Orthology	biological process
extracellular region part	Blast	cellular component
cell periphery	Blast	cellular component
cytoplasmic part	Blast	cellular component
plasma membrane region	Blast	cellular component

GO (Orthology)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
endocardial cushion development	Hs	biological process
calcium ion binding	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
extracellular space	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
Golgi apparatus	Hs	cellular component
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component

GO (Blast)