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Gene Card

Best human hits

DOC2B; RPH3A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013358

Gene Model ID

KH2012:KH.L96.17

Location

KhL96:13817..28965

Transcript Models and Sequences

  KH2012:KH.L96.17.v1.A.nonSL2-1
KH2012:KH.L96.17.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005345
ENSEMBL ENSCING00000023140
Collections

Gateway full ORF

2 results

cien186552

Plate: VES99_G03

cien187273

Plate: VES99_D05

Gene collection 1 (N. Satoh)

2 results

cieg007b18

Plate: R1CiGC16b23

cieg037b03

Plate: R1CiGC21m06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
C2_domain_sf Gene3D C2 domain superfamily
C2_dom ProSiteProfiles C2 domain
Synaptotagmin PRINTS Synaptotagmin
C2_dom PRINTS C2 domain
RPH3A PANTHER Rabphilin-3A
Znf_FYVE_PHD SUPERFAMILY Zinc finger, FYVE/PHD-type
C2_dom Pfam C2 domain
C2_dom SMART C2 domain
Znf_FYVE-rel ProSiteProfiles Zinc finger, FYVE-related
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
Rab_BD ProSiteProfiles Rab-binding domain

GOSlim

37 results

GO Term Annotation Origin Type
calcium ion binding Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
Golgi apparatus Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
intracellular protein transport Orthology biological process
zinc ion binding Orthology molecular function
protein transport Orthology biological process
membrane Orthology cellular component
cell junction Orthology cellular component
macromolecular complex Orthology cellular component
neuron projection Orthology cellular component
macromolecular complex binding Orthology molecular function
synapse Orthology cellular component
metal ion binding Orthology molecular function
nucleus Orthology cellular component
nucleolus Orthology cellular component
lysosome Orthology cellular component
chemical synaptic transmission Orthology biological process
nervous system development Orthology biological process
cytoplasmic vesicle Orthology cellular component
anion binding Orthology molecular function
membrane organization Orthology biological process
organelle organization Orthology biological process
synapse part Orthology cellular component
endomembrane system Orthology cellular component
neuron part Orthology cellular component
binding Orthology molecular function
enzyme binding Orthology molecular function
membrane part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
intracellular organelle part Orthology cellular component
cell-cell signaling Orthology biological process
intracellular transport Orthology biological process
small molecule binding Orthology molecular function

GO (Orthology)

46 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
calcium ion binding Hs molecular function
protein binding Hs molecular function
calcium-dependent phospholipid binding Hs molecular function
phosphatidylinositol-4,5-bisphosphate binding Hs molecular function
intracellular Hs cellular component
Golgi apparatus Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
intracellular protein transport Hs biological process
vesicle fusion Hs biological process
synaptic vesicle Hs cellular component
zinc ion binding Hs molecular function
lipid binding Hs molecular function
selenium binding Hs molecular function
protein transport Hs biological process
membrane Hs cellular component
Rab GTPase binding Hs molecular function
regulation of calcium ion-dependent exocytosis Hs biological process
extrinsic component of membrane Hs cellular component
syntaxin binding Hs molecular function
cell junction Hs cellular component
secretory granule Hs cellular component
clathrin binding Hs molecular function
synaptic vesicle membrane Hs cellular component
positive regulation of vesicle fusion Hs biological process
positive regulation of insulin secretion Hs biological process
macromolecular complex Hs cellular component
phosphate ion binding Hs molecular function
neuron projection Hs cellular component
macromolecular complex binding Hs molecular function
synapse Hs cellular component
positive regulation of calcium ion-dependent exocytosis Hs biological process
metal ion binding Hs molecular function
calcium ion-regulated exocytosis of neurotransmitter Hs biological process
exocytic vesicle Hs cellular component
inositol 1,4,5 trisphosphate binding Hs molecular function
presynapse Hs cellular component
phosphatidylinositol phosphate binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
lysosome Hs cellular component
exocytosis Hs biological process
chemical synaptic transmission Hs biological process
nervous system development Hs biological process
synaptic vesicle exocytosis Hs biological process
cytoplasmic vesicle Hs cellular component

GO (Blast)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
calcium ion binding Hs molecular function 242 4.85e-73
protein binding Hs molecular function 229 1.06e-65
calcium-dependent phospholipid binding Hs molecular function 242 4.85e-73
phosphatidylinositol-4,5-bisphosphate binding Hs molecular function 229 1.06e-65
intracellular Hs cellular component 229 1.06e-65
Golgi apparatus Hs cellular component 229 1.06e-65
cytosol Hs cellular component 229 1.06e-65
plasma membrane Hs cellular component 242 4.85e-73
synaptic vesicle Hs cellular component 229 1.06e-65
zinc ion binding Hs molecular function 229 1.06e-65
lipid binding Hs molecular function 229 1.06e-65
selenium binding Hs molecular function 229 1.06e-65
membrane Hs cellular component 242 4.85e-73
Rab GTPase binding Hs molecular function 229 1.06e-65
extrinsic component of membrane Hs cellular component 229 1.06e-65
syntaxin binding Hs molecular function 242 4.85e-73
cell junction Hs cellular component 229 1.06e-65
secretory granule Hs cellular component 229 1.06e-65
clathrin binding Hs molecular function 242 4.85e-73
synaptic vesicle membrane Hs cellular component 229 1.06e-65
macromolecular complex Hs cellular component 229 1.06e-65
phosphate ion binding Hs molecular function 229 1.06e-65
neuron projection Hs cellular component 229 1.06e-65
macromolecular complex binding Hs molecular function 229 1.06e-65
synapse Hs cellular component 242 4.85e-73
metal ion binding Hs molecular function 229 1.06e-65
exocytic vesicle Hs cellular component 242 4.85e-73
inositol 1,4,5 trisphosphate binding Hs molecular function 229 1.06e-65
presynapse Hs cellular component 242 4.85e-73
phosphatidylinositol phosphate binding Hs molecular function 229 1.06e-65

GO (InterProScan)

3 results

GO Term Analysis Type e-value
intracellular protein transport PANTHER biological process 6.5E-124
membrane PRINTS cellular component 2.7E-6
Rab GTPase binding ProSiteProfiles molecular function 13.855

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