Aniseed - Gene card

Gene Card

Best human hits

TLE1; TLE2; TLE3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013347

Gene Model ID

KH2012:KH.L96.11

Location

KhL96:708617..722361

Transcript Models and Sequences

KH2012:KH.L96.11.v1.A.SL1-1
KH2012:KH.L96.11.v1.A.SL2-1
KH2012:KH.L96.11.v1.A.SL3-1
KH2012:KH.L96.11.v1.A.SL4-1
KH2012:KH.L96.11.v2.A.SL1-1
KH2012:KH.L96.11.v2.A.SL2-1
KH2012:KH.L96.11.v2.A.SL3-1
KH2012:KH.L96.11.v2.A.SL4-1

External Database Gene Card

External database links

6 results

Database	Gene ID
ENSEMBL	ENSCING00000008703
NCBI Reference Sequence	NM_001078259.2
NCBI Reference Sequence	XM_009863600.2
NCBI Reference Sequence	XM_018816370.1
NCBI Reference Sequence	XM_018816371.1
NCBI Reference Sequence	XM_018816372.1

Collections

Gene collection 1 (N. Satoh)

4 results

citb101m06

Plate: R1CiGC46p06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
WD40_repeat	ProSiteProfiles	WD40 repeat
WD40_repeat	SMART	WD40 repeat
WD40_repeat_CS	ProSitePatterns	WD40 repeat, conserved site
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily
Groucho_enhance	PRINTS	Groucho/transducin-like enhancer
WD40_repeat	Pfam	WD40 repeat
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat_dom	ProSiteProfiles	WD40-repeat-containing domain
Groucho/TLE_N	Pfam	Groucho/TLE, N-terminal Q-rich domain

GOSlim

29 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription corepressor activity	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular space	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
focal adhesion	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
signal transduction	Orthology	biological process
multicellular organism development	Orthology	biological process
transcription factor binding	Orthology	molecular function
positive regulation of gene expression	Orthology	biological process
nuclear body	Orthology	cellular component
negative regulation of Wnt signaling pathway	Orthology	biological process
identical protein binding	Orthology	molecular function
negative regulation of transcription, DNA-templated	Orthology	biological process
negative regulation of canonical Wnt signaling pathway	Orthology	biological process
chromatin binding	Orthology	molecular function
animal organ development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cell-cell signaling	Orthology	biological process
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
intracellular signal transduction	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component

GO (Orthology)

27 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II transcription corepressor activity	Hs	molecular function
transcription corepressor activity	Hs	molecular function
protein binding	Hs	molecular function
extracellular space	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytosol	Hs	cellular component
focal adhesion	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
signal transduction	Hs	biological process
multicellular organism development	Hs	biological process
transcription factor binding	Hs	molecular function
animal organ morphogenesis	Hs	biological process
positive regulation of gene expression	Hs	biological process
Wnt signaling pathway	Hs	biological process
nuclear body	Hs	cellular component
negative regulation of Wnt signaling pathway	Hs	biological process
identical protein binding	Hs	molecular function
negative regulation of I-kappaB kinase/NF-kappaB signaling	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
negative regulation of canonical Wnt signaling pathway	Hs	biological process
beta-catenin-TCF complex	Hs	cellular component
chromatin binding	Hs	molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function
repressing transcription factor binding	Hs	molecular function

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
RNA polymerase II transcription corepressor activity	Hs	molecular function	775
transcription corepressor activity	Hs	molecular function	540
protein binding	Hs	molecular function	775
extracellular space	Hs	cellular component	540
nucleus	Hs	cellular component	775
nucleoplasm	Hs	cellular component	775
cytosol	Hs	cellular component	775
focal adhesion	Hs	cellular component	540
transcription factor binding	Hs	molecular function	775
nuclear body	Hs	cellular component	540
identical protein binding	Hs	molecular function	775
beta-catenin-TCF complex	Hs	cellular component	775

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
protein binding	Gene3D	molecular function	8.5E-131
nucleus	PRINTS	cellular component	2.3E-51
regulation of transcription, DNA-templated	PRINTS	biological process	2.3E-51