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GENE CARD

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Gene Card

Best human hits

DEPDC1B; DEPDC4; DEPDC7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013312

Gene Model ID

KH2012:KH.L94.1

Location

KhL94:954..10825

Transcript Models and Sequences

  KH2012:KH.L94.1.v1.A.ND2-1
KH2012:KH.L94.1.v1.A.nonSL3-1
KH2012:KH.L94.1.v1.A.nonSL4-1
KH2012:KH.L94.1.v2.A.nonSL3-1
KH2012:KH.L94.1.v2.A.nonSL4-1
KH2012:KH.L94.1.v2.A.SL5-1
KH2012:KH.L94.1.v2.R.ND1-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000001421
ENSEMBL ENSCING00000023212
NCBI Reference Sequence XM_018816351.1
NCBI Reference Sequence XM_018816352.1
Collections

Gateway full ORF

8 results

cien36203

Plate: VES76_J02

cien39397

Plate: VES76_A14

cien55557

Plate: VES78_F24

cima857443

Plate: VES64_M02

cien129081

Plate: VES90_P11

cien133943

Plate: VES91_O06

cien148108

Plate: VES93_F10

cien166374

Plate: VES96_P02

Gene collection 1 (N. Satoh)

2 results

cieg056k14

Plate: R1CiGC24j13

cicl024b22

Plate: R1CiGC11m20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
DEP_dom Pfam DEP domain
DEP_dom SMART DEP domain
Rho_GTPase_activation_prot SUPERFAMILY Rho GTPase activation protein
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
DEP_dom ProSiteProfiles DEP domain

GOSlim

8 results

GO Term Annotation Origin Type
GTPase activator activity Orthology molecular function
intracellular Orthology cellular component
cytosol Orthology cellular component
signal transduction Orthology biological process
intracellular signal transduction Orthology biological process
positive regulation of GTPase activity Orthology biological process
small GTPase mediated signal transduction Orthology biological process
regulation of signal transduction Orthology biological process

GO (Orthology)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
GTPase activator activity Hs molecular function
intracellular Hs cellular component
cytosol Hs cellular component
signal transduction Hs biological process
intracellular signal transduction Hs biological process
positive regulation of GTPase activity Hs biological process
regulation of small GTPase mediated signal transduction Hs biological process

GO (Blast)

3 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
GTPase activator activity Hs molecular function 76.3 3.41e-14
intracellular Hs cellular component 70.5 1.28e-12
cytosol Hs cellular component 76.3 3.41e-14

GO (InterProScan)

2 results

GO Term Analysis Type e-value
signal transduction SUPERFAMILY biological process 1.33E-6
intracellular signal transduction Pfam biological process 1.9E-11

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