Aniseed - Gene card

Gene 'KH2012:KH.L90.10'

Gene Card

Best human hits

SLC6A1; SLC6A12; SLC6A13

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013279

Gene Model ID

KH2012:KH.L90.10

Location

KhL90:31922..38339

Transcript Models and Sequences

KH2012:KH.L90.10.v1.A.ND1-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004530
ENSEMBL	ENSCING00000024320
NCBI Reference Sequence	XM_018816331.1

Collections

Gateway full ORF

1 result

cima875769

Plate: VES67_J19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
SNS_sf	SUPERFAMILY	Sodium:neurotransmitter symporter superfamily
Na/ntran_symport	PRINTS	Sodium:neurotransmitter symporter
Na/ntran_symport	PANTHER	Sodium:neurotransmitter symporter
Na/ntran_symport	ProSiteProfiles	Sodium:neurotransmitter symporter
Na/ntran_symport	Pfam	Sodium:neurotransmitter symporter

GOSlim

14 results

GO Term	Annotation Origin	Type
protein binding	Blast	molecular function
plasma membrane	Blast	cellular component
integral component of plasma membrane	Blast	cellular component
cell surface	Blast	cellular component
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
axon	Blast	cellular component
neuron projection	Blast	cellular component
metal ion binding	Blast	molecular function
transmembrane transport	Blast	biological process
extracellular exosome	Blast	cellular component
sodium ion transport	Blast	biological process
organic substance transport	Blast	biological process
ion transport	Blast	biological process

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
transporter activity	Hs	molecular function	253	9.91e-79
neurotransmitter:sodium symporter activity	Hs	molecular function	258	8.06e-81
gamma-aminobutyric acid:sodium symporter activity	Hs	molecular function	258	8.06e-81
protein binding	Hs	molecular function	248	1.21e-76
plasma membrane	Hs	cellular component	258	8.06e-81
integral component of plasma membrane	Hs	cellular component	258	8.06e-81
cell surface	Hs	cellular component	258	8.06e-81
amino acid transmembrane transporter activity	Hs	molecular function	248	1.21e-76
symporter activity	Hs	molecular function	258	8.06e-81
membrane	Hs	cellular component	258	8.06e-81
integral component of membrane	Hs	cellular component	258	8.06e-81
axon	Hs	cellular component	258	8.06e-81
neuron projection	Hs	cellular component	258	8.06e-81
metal ion binding	Hs	molecular function	258	8.06e-81
extracellular exosome	Hs	cellular component	253	9.91e-79

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
neurotransmitter:sodium symporter activity	PANTHER	molecular function	2.2E-142
neurotransmitter transport	PANTHER	biological process	2.2E-142
integral component of membrane	PANTHER	cellular component	2.2E-142