Gene Card
Best human hits
PABPC1; PABPC3; SART3
Unique Gene ID
Cirobu.g00013186
Gene Model ID
KH2012:KH.L87.24
Location
KhL87:48658..58348
Transcript Models and Sequences
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000009762 |
| NCBI Reference Sequence | XM_002121237.4 |
Gateway full ORF
2 results
cien101384
Plate: VES86_F04
cien212673
Plate: VES103_G06
Gene collection 1 (N. Satoh)
2 results
cieg015g08
Plate: R1CiGC17h12
cicl024l22
Plate: R1CiGC11b19
n/a
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InterPro
9 results
| IPR Term | Analysis | Definition |
|---|---|---|
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| TPR-like_helical_dom_sf | Gene3D | Tetratricopeptide-like helical domain superfamily |
| RRM_dom | Pfam | RNA recognition motif domain |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| TPR-like_helical_dom_sf | SUPERFAMILY | Tetratricopeptide-like helical domain superfamily |
| HAT | SMART | HAT (Half-A-TPR) repeat |
| SART3_RRM2 | CDD | SART3, RNA recognition motif 2 |
| RRM_dom | SMART | RNA recognition motif domain |
GOSlim
32 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| mRNA splicing, via spliceosome | Orthology | biological process |
| cell morphogenesis | Orthology | biological process |
| nucleic acid binding | Orthology | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| cytoplasm | Orthology | cellular component |
| cytosol | Blast | cellular component |
| focal adhesion | Blast | cellular component |
| RNA processing | Orthology | biological process |
| mRNA processing | Orthology | biological process |
| protein C-terminus binding | Blast | molecular function |
| RNA splicing | Orthology | biological process |
| regulation of gene expression | Orthology | biological process |
| membrane | Blast | cellular component |
| nuclear speck | Orthology | cellular component |
| extracellular exosome | Blast | cellular component |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| organelle organization | Orthology | biological process |
| DNA binding | Orthology | molecular function |
| nuclear body | Orthology | cellular component |
| cell proliferation | Orthology | biological process |
| animal organ development | Orthology | biological process |
| immune system process | Orthology | biological process |
| cell division | Orthology | biological process |
| peptidase activity, acting on L-amino acid peptides | Orthology | molecular function |
| enzyme binding | Orthology | molecular function |
| positive regulation of gene expression | Blast | biological process |
| cytoplasmic part | Blast | cellular component |
| intracellular non-membrane-bounded organelle | Blast | cellular component |
GO (Orthology)
26 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| spliceosomal tri-snRNP complex assembly | Hs | biological process |
| spliceosomal snRNP assembly | Hs | biological process |
| mRNA splicing, via spliceosome | Hs | biological process |
| cell morphogenesis | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| U6atac snRNP | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| nucleosome assembly | Hs | biological process |
| RNA processing | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| regulation of gene expression | Hs | biological process |
| Cajal body | Hs | cellular component |
| nuclear speck | Hs | cellular component |
| U6 snRNA binding | Hs | molecular function |
| U4 snRNA binding | Hs | molecular function |
| U6atac snRNA binding | Hs | molecular function |
| histone binding | Hs | molecular function |
| U4/U6 snRNP | Hs | cellular component |
| hematopoietic stem cell proliferation | Hs | biological process |
| positive regulation of histone deubiquitination | Hs | biological process |
| ubiquitin-specific protease binding | Hs | molecular function |
GO (Blast)
29 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 607 | 0.0 |
| RNA binding | Hs | molecular function | 607 | 0.0 |
| mRNA 3'-UTR binding | Hs | molecular function | 94.4 | 8.87e-20 |
| protein binding | Hs | molecular function | 607 | 0.0 |
| nucleus | Hs | cellular component | 607 | 0.0 |
| nucleoplasm | Hs | cellular component | 607 | 0.0 |
| spliceosomal complex | Hs | cellular component | 94.4 | 8.87e-20 |
| U6atac snRNP | Hs | cellular component | 607 | 0.0 |
| cytoplasm | Hs | cellular component | 607 | 0.0 |
| cytosol | Hs | cellular component | 94.7 | 7.17e-20 |
| focal adhesion | Hs | cellular component | 94.4 | 8.87e-20 |
| protein C-terminus binding | Hs | molecular function | 94.4 | 8.87e-20 |
| poly(A) binding | Hs | molecular function | 94.7 | 7.17e-20 |
| poly(U) RNA binding | Hs | molecular function | 94.4 | 8.87e-20 |
| translation activator activity | Hs | molecular function | 94.4 | 8.87e-20 |
| cytoplasmic stress granule | Hs | cellular component | 94.4 | 8.87e-20 |
| Cajal body | Hs | cellular component | 607 | 0.0 |
| membrane | Hs | cellular component | 94.4 | 8.87e-20 |
| nuclear speck | Hs | cellular component | 607 | 0.0 |
| U6 snRNA binding | Hs | molecular function | 607 | 0.0 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 94.4 | 8.87e-20 |
| U4 snRNA binding | Hs | molecular function | 607 | 0.0 |
| U6atac snRNA binding | Hs | molecular function | 607 | 0.0 |
| cytoplasmic ribonucleoprotein granule | Hs | cellular component | 94.4 | 8.87e-20 |
| histone binding | Hs | molecular function | 607 | 0.0 |
| extracellular exosome | Hs | cellular component | 94.7 | 7.17e-20 |
| U4/U6 snRNP | Hs | cellular component | 607 | 0.0 |
| catalytic step 2 spliceosome | Hs | cellular component | 94.4 | 8.87e-20 |
| ubiquitin-specific protease binding | Hs | molecular function | 607 | 0.0 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 8.6E-25 |
| protein binding | SUPERFAMILY | molecular function | 2.66E-53 |
| RNA processing | SMART | biological process | 0.014 |
