Aniseed - Gene card

Gene 'KH2012:KH.L87.20'

Gene Card

Best human hits

HM13; SPPL2B; SPPL3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013182

Gene Model ID

KH2012:KH.L87.20

Location

KhL87:38464..44053

Transcript Models and Sequences

KH2012:KH.L87.20.v1.A.SL2-1
KH2012:KH.L87.20.v2.A.ND1-1
KH2012:KH.L87.20.v2.A.nonSL3-1
KH2012:KH.L87.20.v3.A.SL2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000009763
NCBI Reference Sequence	NM_001032797.1
NCBI Reference Sequence	XM_009863552.2

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

cicl001g08

Plate: R1CiGC08o03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Preselin/SPP	SMART	Presenilin/signal peptide peptidase
Peptidase_A22B_SPP	PANTHER	Peptidase A22B, signal peptide peptidase
Peptidase_A22B_SPP	Pfam	Peptidase A22B, signal peptide peptidase

GOSlim

29 results

GO Term	Annotation Origin	Type
Golgi membrane	Blast	cellular component
protein binding	Orthology	molecular function
nucleoplasm	Blast	cellular component
lysosome	Blast	cellular component
lysosomal membrane	Orthology	cellular component
endosome	Blast	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
Golgi apparatus	Blast	cellular component
centrosome	Blast	cellular component
plasma membrane	Orthology	cellular component
proteolysis	Orthology	biological process
peptidase activity	Orthology	molecular function
cell surface	Orthology	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
hydrolase activity	Orthology	molecular function
ubiquitin protein ligase binding	Orthology	molecular function
protein homodimerization activity	Orthology	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
endopeptidase activity	Orthology	molecular function
intracellular organelle part	Orthology	cellular component
whole membrane	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
protein homooligomerization	Orthology	biological process
cytoskeleton	Blast	cellular component
cytoplasmic part	Blast	cellular component

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
aspartic-type endopeptidase activity	Hs	molecular function
protein binding	Hs	molecular function
lysosomal membrane	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
rough endoplasmic reticulum	Hs	cellular component
plasma membrane	Hs	cellular component
proteolysis	Hs	biological process
peptidase activity	Hs	molecular function
cell surface	Hs	cellular component
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
hydrolase activity	Hs	molecular function
Golgi-associated vesicle membrane	Hs	cellular component
ubiquitin protein ligase binding	Hs	molecular function
membrane protein proteolysis	Hs	biological process
Derlin-1 retrotranslocation complex	Hs	cellular component
aspartic endopeptidase activity, intramembrane cleaving	Hs	molecular function
protein homodimerization activity	Hs	molecular function
protein homotetramerization	Hs	biological process
integral component of cytoplasmic side of endoplasmic reticulum membrane	Hs	cellular component
integral component of lumenal side of endoplasmic reticulum membrane	Hs	cellular component

GO (Blast)