Aniseed - Gene card

Gene Card

Best human hits

ARF1; ARF3; SRPRB

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013140

Gene Model ID

KH2012:KH.L84.15

Location

KhL84:179254..183613

Transcript Models and Sequences

KH2012:KH.L84.15.v1.A.nonSL9-1
KH2012:KH.L84.15.v1.A.SL1-1
KH2012:KH.L84.15.v1.A.SL3-1
KH2012:KH.L84.15.v1.A.SL6-1
KH2012:KH.L84.15.v1.A.SL7-1
KH2012:KH.L84.15.v1.A.SL8-1
KH2012:KH.L84.15.v2.A.ND5-1
KH2012:KH.L84.15.v3.A.nonSL9-1
KH2012:KH.L84.15.v3.A.SL1-1
KH2012:KH.L84.15.v3.A.SL7-1
KH2012:KH.L84.15.v4.A.ND4-1
KH2012:KH.L84.15.v5.A.ND2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000006131
NCBI Reference Sequence	XM_002130587.4
NCBI Reference Sequence	XM_004227262.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cicl022j02

Plate: R1CiGC11i12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
SRP_receptor_beta_su	Pfam	Signal recognition particle receptor, beta subunit
SRP_receptor_beta_su	PANTHER	Signal recognition particle receptor, beta subunit
SRP_receptor_beta_su	CDD	Signal recognition particle receptor, beta subunit

GOSlim

32 results

GO Term	Annotation Origin	Type
Golgi membrane	Blast	cellular component
nucleotide binding	Orthology	molecular function
RNA binding	Blast	molecular function
GTPase activity	Blast	molecular function
protein binding	Blast	molecular function
GTP binding	Orthology	molecular function
intracellular	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
Golgi apparatus	Blast	cellular component
cytosol	Blast	cellular component
plasma membrane	Blast	cellular component
focal adhesion	Blast	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
cell junction	Blast	cellular component
cell leading edge	Blast	cellular component
macromolecular complex	Orthology	cellular component
neuron projection	Blast	cellular component
synapse	Blast	cellular component
postsynaptic membrane	Blast	cellular component
protein heterodimerization activity	Blast	molecular function
perinuclear region of cytoplasm	Blast	cellular component
extracellular exosome	Blast	cellular component
macromolecular complex binding	Orthology	molecular function
bounding membrane of organelle	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
microtubule	Orthology	cellular component
organelle	Blast	cellular component
postsynapse	Blast	cellular component
neuron part	Blast	cellular component

GO (Orthology)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
signal recognition particle binding	Hs	molecular function
GTP binding	Hs	molecular function
intracellular	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
signal recognition particle receptor complex	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
cytoplasmic microtubule	Hs	cellular component
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component

GO (Blast)

31 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	54.3	5.08e-09
nucleotide binding	Hs	molecular function	215	1.23e-69
RNA binding	Hs	molecular function	54.3	5.08e-09
GTPase activity	Hs	molecular function	54.3	5.08e-09
signal recognition particle binding	Hs	molecular function	215	1.23e-69
signal transducer activity, downstream of receptor	Hs	molecular function	54.3	5.08e-09
protein binding	Hs	molecular function	54.3	5.08e-09
GTP binding	Hs	molecular function	215	1.23e-69
intracellular	Hs	cellular component	215	1.23e-69
cytoplasm	Hs	cellular component	215	1.23e-69
endoplasmic reticulum	Hs	cellular component	215	1.23e-69
signal recognition particle receptor complex	Hs	cellular component	215	1.23e-69
endoplasmic reticulum membrane	Hs	cellular component	215	1.23e-69
Golgi apparatus	Hs	cellular component	54.3	5.08e-09
cytosol	Hs	cellular component	54.3	5.08e-09
cytoplasmic microtubule	Hs	cellular component	215	1.23e-69
plasma membrane	Hs	cellular component	54.3	5.08e-09
focal adhesion	Hs	cellular component	54.3	5.08e-09
postsynaptic density	Hs	cellular component	54.3	5.08e-09
membrane	Hs	cellular component	215	1.23e-69
integral component of membrane	Hs	cellular component	215	1.23e-69
protein domain specific binding	Hs	molecular function	54.3	5.08e-09
cell junction	Hs	cellular component	54.3	5.08e-09
cell leading edge	Hs	cellular component	54.3	5.08e-09
macromolecular complex	Hs	cellular component	54.3	5.08e-09
neuron projection	Hs	cellular component	54.3	5.08e-09
synapse	Hs	cellular component	54.3	5.08e-09
postsynaptic membrane	Hs	cellular component	54.3	5.08e-09
protein heterodimerization activity	Hs	molecular function	54.3	5.08e-09
perinuclear region of cytoplasm	Hs	cellular component	54.3	5.08e-09
extracellular exosome	Hs	cellular component	54.3	5.08e-09

GO (InterProScan)