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GENE CARD

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  2. Gene 'RFP' > 
  3. Gene 'KH2012:KH.S643.6' > 
  4. Gene 'Boleac.CG.SB_v3.S179...' > 

Gene Card

Best human hits

TBX2; TBX4; TBX6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013099

Gene Model ID

KH2012:KH.L8.11

Location

KhL8:1019..5025

Transcript Models and Sequences

  KH2012:KH.L8.11.v1.A.nonSL2-1
KH2012:KH.L8.11.v1.A.nonSL3-1
KH2012:KH.L8.11.v1.A.nonSL4-1
KH2012:KH.L8.11.v1.A.nonSL6-1
KH2012:KH.L8.11.v1.A.nonSL8-1
KH2012:KH.L8.11.v1.A.nonSL9-1
KH2012:KH.L8.11.v1.R.nonSL1-1
KH2012:KH.L8.11.v1.R.nonSL5-1
KH2012:KH.L8.11.v1.R.nonSL7-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000020186
Collections

Gateway full ORF

2 results

cien57445

Plate: VES79_P07

cien167035

Plate: VES96_I03

Gene collection 1 (N. Satoh)

1 result

cicl064c01

Plate: R1CiGC39e04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
TF_T-box CDD Transcription factor, T-box
TF_T-box ProSiteProfiles Transcription factor, T-box
TF_T-box PANTHER Transcription factor, T-box
p53-like_TF_DNA-bd SUPERFAMILY p53-like transcription factor, DNA-binding
TF_T-box SMART Transcription factor, T-box
TF_T-box Pfam Transcription factor, T-box
TF_T-box_CS ProSitePatterns Transcription factor, T-box, conserved site
TF_T-box PRINTS Transcription factor, T-box
T-box_sf Gene3D T-box superfamily

GOSlim

12 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
sequence-specific DNA binding Blast molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
transcription factor binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 226 5.28e-66
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 222 7.91e-67
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 226 5.28e-66
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 226 5.28e-66
RNA polymerase II transcription factor binding Hs molecular function 222 7.91e-67
RNA polymerase II activating transcription factor binding Hs molecular function 222 7.91e-67
transcriptional repressor activity, RNA polymerase II transcription factor binding Hs molecular function 222 7.91e-67
DNA binding Hs molecular function 226 5.28e-66
transcription factor activity, sequence-specific DNA binding Hs molecular function 226 5.28e-66
protein binding Hs molecular function 226 5.28e-66
nucleus Hs cellular component 226 5.28e-66
transcription factor complex Hs cellular component 226 5.28e-66
sequence-specific DNA binding Hs molecular function 226 5.28e-66

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 4.1E-206
nucleus PANTHER cellular component 4.1E-206
regulation of transcription, DNA-templated PANTHER biological process 4.1E-206

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