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Gene Card

Best human hits

POLR3D

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012827

Gene Model ID

KH2012:KH.L57.8

Location

KhL57:154671..158544

Transcript Models and Sequences

  KH2012:KH.L57.8.v1.A.ND2-1
KH2012:KH.L57.8.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000008141
Collections

Gateway full ORF

2 results

cien47638

Plate: VES77_K19

cima862233

Plate: VES64_F24

Gene collection 1 (N. Satoh)

1 result

cilv040h17

Plate: R1CiGC28g12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
RPC4 Pfam DNA-directed RNA polymerase III subunit RPC4
RPC4 PANTHER DNA-directed RNA polymerase III subunit RPC4

GOSlim

16 results

GO Term Annotation Origin Type
immune system process Orthology biological process
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytosol Orthology cellular component
nuclear speck Orthology cellular component
innate immune response Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
transcription, DNA-templated Orthology biological process
transferase activity, transferring phosphorus-containing groups Orthology molecular function
RNA biosynthetic process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
defense response Orthology biological process

GO (Orthology)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear chromatin Hs cellular component
RNA polymerase III activity Hs molecular function
immune system process Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
DNA-directed 5'-3' RNA polymerase activity Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
DNA-directed RNA polymerase III complex Hs cellular component
cytosol Hs cellular component
transcription from RNA polymerase III promoter Hs biological process
nuclear speck Hs cellular component
positive regulation of type I interferon production Hs biological process
innate immune response Hs biological process
positive regulation of innate immune response Hs biological process
defense response to virus Hs biological process

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 141 1.67e-38
RNA polymerase III activity Hs molecular function 141 1.67e-38
DNA binding Hs molecular function 141 1.67e-38
chromatin binding Hs molecular function 141 1.67e-38
DNA-directed 5'-3' RNA polymerase activity Hs molecular function 141 1.67e-38
nucleus Hs cellular component 141 1.67e-38
nucleoplasm Hs cellular component 141 1.67e-38
DNA-directed RNA polymerase III complex Hs cellular component 141 1.67e-38
cytosol Hs cellular component 141 1.67e-38
nuclear speck Hs cellular component 141 1.67e-38

GO (InterProScan)

4 results

GO Term Analysis Type e-value
DNA binding PANTHER molecular function 1.1E-59
DNA-directed 5'-3' RNA polymerase activity PANTHER molecular function 1.1E-59
DNA-directed RNA polymerase III complex PANTHER cellular component 1.1E-59
transcription from RNA polymerase III promoter PANTHER biological process 1.1E-59

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