Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000000752
NCBI Reference Sequence	NM_001078512.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg053n09

Plate: R1CiGC24g13

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
TFIIH_SSL1/p44	TIGRFAM	TFIIH subunit Ssl1/p44
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
vWFA_dom_sf	Gene3D	von Willebrand factor A-like domain superfamily
TFIIH_SSL1/p44	PANTHER	TFIIH subunit Ssl1/p44
vWFA_dom_sf	SUPERFAMILY	von Willebrand factor A-like domain superfamily
TFIIH_SSL1/p44	PIRSF	TFIIH subunit Ssl1/p44
TFIIH_C1-like_dom	SMART	TFIIH C1-like domain
Ssl1-like	Pfam	Ssl1-like
TFIIH_C1-like_dom	Pfam	TFIIH C1-like domain
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Ssl1-like	CDD	Ssl1-like

GOSlim

26 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein kinase activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
DNA repair	Orthology	biological process
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
transcription initiation from RNA polymerase II promoter	Orthology	biological process
protein phosphorylation	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
zinc ion binding	Orthology	molecular function
nuclear speck	Orthology	cellular component
metal ion binding	Orthology	molecular function
protein N-terminus binding	Orthology	molecular function
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
nuclear part	Orthology	cellular component
mRNA processing	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
RNA binding	Orthology	molecular function
regulation of gene expression	Orthology	biological process
protein serine/threonine kinase activity	Orthology	molecular function

GO (Orthology)

35 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
core TFIIH complex portion of holo TFIIH complex	Hs	cellular component
core TFIIH complex	Hs	cellular component
nucleic acid binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein kinase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription factor TFIID complex	Hs	cellular component
holo TFIIH complex	Hs	cellular component
DNA repair	Hs	biological process
transcription-coupled nucleotide-excision repair	Hs	biological process
nucleotide-excision repair	Hs	biological process
nucleotide-excision repair, DNA incision, 3'-to lesion	Hs	biological process
nucleotide-excision repair, DNA incision, 5'-to lesion	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
termination of RNA polymerase I transcription	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
7-methylguanosine mRNA capping	Hs	biological process
translation	Hs	biological process
protein phosphorylation	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
DNA-dependent ATPase activity	Hs	molecular function
translation factor activity, RNA binding	Hs	molecular function
zinc ion binding	Hs	molecular function
RNA polymerase II carboxy-terminal domain kinase activity	Hs	molecular function
response to UV	Hs	biological process
nuclear speck	Hs	cellular component
nucleotide-excision repair, DNA incision	Hs	biological process
metal ion binding	Hs	molecular function
protein N-terminus binding	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
core TFIIH complex portion of holo TFIIH complex	Hs	cellular component	402	3.90e-139
core TFIIH complex	Hs	cellular component	402	3.90e-139
nucleic acid binding	Hs	molecular function	402	3.90e-139
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	402	3.90e-139
protein kinase activity	Hs	molecular function	402	3.90e-139
protein binding	Hs	molecular function	402	3.90e-139
nucleus	Hs	cellular component	402	3.90e-139
nucleoplasm	Hs	cellular component	402	3.90e-139
transcription factor TFIID complex	Hs	cellular component	402	3.90e-139
holo TFIIH complex	Hs	cellular component	402	3.90e-139
DNA-dependent ATPase activity	Hs	molecular function	402	3.90e-139
translation factor activity, RNA binding	Hs	molecular function	402	3.90e-139
zinc ion binding	Hs	molecular function	402	3.90e-139
RNA polymerase II carboxy-terminal domain kinase activity	Hs	molecular function	402	3.90e-139
nuclear speck	Hs	cellular component	402	3.90e-139
metal ion binding	Hs	molecular function	402	3.90e-139
protein N-terminus binding	Hs	molecular function	402	3.90e-139

GO (InterProScan)

6 results

GO Term	Analysis	Type	e-value
core TFIIH complex	PANTHER	cellular component	1.8E-156
nucleic acid binding	ProSitePatterns	molecular function
DNA repair	SMART	biological process	9.6E-19
nucleotide-excision repair	PANTHER	biological process	1.8E-156
transcription, DNA-templated	PANTHER	biological process	1.8E-156
zinc ion binding	SMART	molecular function	9.6E-19

Gene Card

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