Aniseed - Gene card

Gene 'KH2012:KH.L41.3'

Gene Card

Best human hits

PRDM10; PRDM15; PRDM4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012581

Gene Model ID

KH2012:KH.L41.3

Location

KhL41:274907..283479

Transcript Models and Sequences

KH2012:KH.L41.3.v1.A.SL1-1
KH2012:KH.L41.3.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000001014
ENSEMBL	ENSCING00000019788
NCBI Reference Sequence	XM_002128321.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg021m05

Plate: R1CiGC18l12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
SET_dom	ProSiteProfiles	SET domain

GOSlim

18 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
zinc ion binding	Blast	molecular function
nuclear body	Blast	cellular component
transferase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
metabolic process	Orthology	biological process
nucleoplasm part	Blast	cellular component
macromolecular complex	Blast	cellular component
enzyme binding	Blast	molecular function

GO (Orthology)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
methyltransferase activity	Hs	molecular function
transferase activity	Hs	molecular function
methylation	Hs	biological process
metal ion binding	Hs	molecular function

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	75.1	9.94e-14
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	75.1	9.94e-14
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	75.1	9.94e-14
nucleic acid binding	Hs	molecular function	215	2.08e-58
DNA binding	Hs	molecular function	215	2.08e-58
protein binding	Hs	molecular function	215	2.08e-58
nucleus	Hs	cellular component	215	2.08e-58
nucleoplasm	Hs	cellular component	98.2	8.21e-21
cytoplasm	Hs	cellular component	75.1	9.94e-14
methyltransferase activity	Hs	molecular function	215	2.08e-58
zinc ion binding	Hs	molecular function	75.1	9.94e-14
nuclear body	Hs	cellular component	98.2	8.21e-21
transferase activity	Hs	molecular function	215	2.08e-58
histone methyltransferase complex	Hs	cellular component	75.1	9.94e-14
metal ion binding	Hs	molecular function	215	2.08e-58
histone methyltransferase binding	Hs	molecular function	75.1	9.94e-14

GO (InterProScan)