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GENE CARD

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  1. Gene 'KH2012:KH.L24.10'

Gene Card

Best human hits

EBF1; EBF2; EBF3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012207

Gene Model ID

KH2012:KH.L24.10

Location

KhL24:22448..33198

Transcript Models and Sequences

  KH2012:KH.L24.10.v1.A.SL1-1
KH2012:KH.L24.10.v2.A.ND2-2

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000003209
NCBI Reference Sequence NM_001078203.1
NCBI Reference Sequence XM_009863233.2
Collections

Gateway full ORF

2 results

cima865698

Plate: VES65_N18

cima889163

Plate: VES70_L10

Gene collection 1 (N. Satoh)

1 result

ciad013f14

Plate: R1CiGC02i14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

2 results

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
IPT_dom SMART IPT domain
COE_DBD Pfam Transcription factor COE, DNA-binding domain
COE_DBD_sf Gene3D Transcription factor COE, DNA-binding domain superfamily
COE_HLH Pfam Transcription factor COE, helix-loop-helix domain
Transcription_factor_COE PANTHER Transcription factor COE
Ig_E-set SUPERFAMILY Immunoglobulin E-set
IPT_dom Pfam IPT domain
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily
Transcription_factor_COE_CS ProSitePatterns Transcription factor COE, conserved site
Ig-like_fold Gene3D Immunoglobulin-like fold

GOSlim

21 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
protein dimerization activity Orthology molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
transcription factor binding Orthology molecular function
cell differentiation Orthology biological process
animal organ development Orthology biological process

GO (Orthology)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
cell fate determination Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
protein dimerization activity Hs molecular function
brown fat cell differentiation Hs biological process
adipose tissue development Hs biological process
C2H2 zinc finger domain binding Hs molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
transcription factor binding Hs molecular function

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 687 0.0
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 687 0.0
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 687 0.0
DNA binding Hs molecular function 687 0.0
chromatin binding Hs molecular function 651 0.0
transcription factor activity, sequence-specific DNA binding Hs molecular function 687 0.0
protein binding Hs molecular function 678 0.0
nucleus Hs cellular component 687 0.0
metal ion binding Hs molecular function 687 0.0
protein dimerization activity Hs molecular function 687 0.0
C2H2 zinc finger domain binding Hs molecular function 678 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding PANTHER molecular function 2.8E-253
regulation of transcription, DNA-templated PANTHER biological process 2.8E-253
protein dimerization activity Gene3D molecular function 5.0E-24

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