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GENE CARD

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  1. Gene 'KH2012:KH.L18.9'

Gene Card

Best human hits

PRDM9; ZNF768; ZSCAN22

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012032

Gene Model ID

KH2012:KH.L18.9

Location

KhL18:356521..360082

Transcript Models and Sequences

  KH2012:KH.L18.9.v1.A.ND2-1
KH2012:KH.L18.9.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000006145
Collections

Gateway full ORF

2 results

cien74462

Plate: VES82_D02

cima858558

Plate: VES64_H08

Gene collection 1 (N. Satoh)

1 result

cicl011f01

Plate: R1CiGC09p13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
BTB/POZ_dom ProSiteProfiles BTB/POZ domain
Znf_C2H2_jaz Pfam Zinc finger, double-stranded RNA binding
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
SKP1/BTB/POZ_sf SUPERFAMILY SKP1/BTB/POZ domain superfamily
Znf_C2H2_type SMART Zinc finger C2H2-type
BTB/POZ_dom SMART BTB/POZ domain
BTB/POZ_dom Pfam BTB/POZ domain

GOSlim

16 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
RNA binding Blast molecular function
protein binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
transferase activity Blast molecular function
metal ion binding Blast molecular function
nucleoplasm part Blast cellular component
macromolecular complex Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
metabolic process Blast biological process
organelle organization Blast biological process
cellular protein modification process Blast biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 132 1.18e-32
DNA binding Hs molecular function 128 4.09e-32
transcription factor activity, sequence-specific DNA binding Hs molecular function 128 4.09e-32
RNA binding Hs molecular function 125 6.80e-31
protein binding Hs molecular function 132 1.18e-32
intracellular Hs cellular component 132 1.18e-32
nucleus Hs cellular component 132 1.18e-32
nucleoplasm Hs cellular component 132 1.18e-32
DNA-directed RNA polymerase II, core complex Hs cellular component 125 6.80e-31
chromosome Hs cellular component 132 1.18e-32
methyltransferase activity Hs molecular function 132 1.18e-32
transferase activity Hs molecular function 132 1.18e-32
histone-lysine N-methyltransferase activity Hs molecular function 132 1.18e-32
metal ion binding Hs molecular function 132 1.18e-32

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 3.0E-4
protein binding Pfam molecular function 7.7E-20

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