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Gene Card

Best human hits

NEDD1; WDR5; WDR5B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011785

Gene Model ID

KH2012:KH.L170.48

Location

KhL170:78655..85983

Transcript Models and Sequences

  KH2012:KH.L170.48.v1.A.ND1-1
KH2012:KH.L170.48.v1.A.SL2-1
KH2012:KH.L170.48.v2.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
NCBI Reference Sequence XM_002130705.2
NCBI Reference Sequence XM_018815577.1
Collections

Gateway full ORF

4 results

cien103671

Plate: VES86_D13

cien182693

Plate: VES98_C10

cien197160

Plate: VES100_E22

cien206309

Plate: VES102_E09

Gene collection 1 (N. Satoh)

3 results

cieg010h20

Plate: R1CiGC17o17

cieg018h24

Plate: R1CiGC18g12

cieg022i19

Plate: R1CiGC19a21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
WD40/YVTN_repeat-like_dom_sf Gene3D WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat Pfam WD40 repeat
WD40_repeat SMART WD40 repeat
WD40_repeat_dom_sf SUPERFAMILY WD40-repeat-containing domain superfamily
WD40_repeat_dom ProSiteProfiles WD40-repeat-containing domain
WD40_repeat_CS ProSitePatterns WD40 repeat, conserved site

GOSlim

24 results

GO Term Annotation Origin Type
G2/M transition of mitotic cell cycle Orthology biological process
protein binding Orthology molecular function
intracellular Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
centrosome Orthology cellular component
microtubule organizing center Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
cell cycle Orthology biological process
apical part of cell Orthology cellular component
cell division Orthology biological process
cytoskeletal part Orthology cellular component
microtubule cytoskeleton Orthology cellular component
cytoplasmic part Orthology cellular component
cell projection part Orthology cellular component
plasma membrane region Orthology cellular component
macromolecular complex Orthology cellular component
protein localization to organelle Orthology biological process
nucleoplasm part Blast cellular component
organelle organization Blast biological process
transferase activity Blast molecular function
cellular protein modification process Blast biological process

GO (Orthology)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
G2/M transition of mitotic cell cycle Hs biological process
pericentriolar material Hs cellular component
spindle pole Hs cellular component
protein binding Hs molecular function
cytoplasm Hs cellular component
centrosome Hs cellular component
centriole Hs cellular component
microtubule organizing center Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
cell cycle Hs biological process
regulation of G2/M transition of mitotic cell cycle Hs biological process
ciliary basal body Hs cellular component
apical part of cell Hs cellular component
cell division Hs biological process
protein localization to centrosome Hs biological process

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
histone acetyltransferase complex Hs cellular component 62.4 2.08e-10
pericentriolar material Hs cellular component 291 5.73e-89
spindle pole Hs cellular component 291 5.73e-89
protein binding Hs molecular function 291 5.73e-89
intracellular Hs cellular component 62.4 2.08e-10
nucleus Hs cellular component 62.4 2.08e-10
nucleoplasm Hs cellular component 62.4 2.08e-10
Ada2/Gcn5/Ada3 transcription activator complex Hs cellular component 62.4 2.08e-10
cytoplasm Hs cellular component 291 5.73e-89
centrosome Hs cellular component 291 5.73e-89
centriole Hs cellular component 291 5.73e-89
microtubule organizing center Hs cellular component 291 5.73e-89
cytosol Hs cellular component 291 5.73e-89
cytoskeleton Hs cellular component 291 5.73e-89
histone-lysine N-methyltransferase activity Hs molecular function 62.4 2.08e-10
methylated histone binding Hs molecular function 62.4 2.08e-10
histone methyltransferase complex Hs cellular component 62.4 2.08e-10
ciliary basal body Hs cellular component 291 5.73e-89
histone methyltransferase activity (H3-K4 specific) Hs molecular function 62.4 2.08e-10
histone acetyltransferase activity (H4-K5 specific) Hs molecular function 62.4 2.08e-10
histone acetyltransferase activity (H4-K8 specific) Hs molecular function 62.4 2.08e-10
MLL3/4 complex Hs cellular component 62.4 2.08e-10
apical part of cell Hs cellular component 291 5.73e-89
histone acetyltransferase activity (H4-K16 specific) Hs molecular function 62.4 2.08e-10
Set1C/COMPASS complex Hs cellular component 62.4 2.08e-10
MLL1 complex Hs cellular component 62.4 2.08e-10

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 1.6E-48

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