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GENE CARD

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  1. Gene 'KH2012:KH.L164.10'

Gene Card

Best human hits

IKZF1; IKZF4; IKZF5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011678

Gene Model ID

KH2012:KH.L164.10

Location

KhL164:22714..24863

Transcript Models and Sequences

  KH2012:KH.L164.10.v1.A.nonSL2-1
KH2012:KH.L164.10.v1.A.nonSL3-1
KH2012:KH.L164.10.v1.A.SL1-1
KH2012:KH.L164.10.v2.A.nonSL2-1
KH2012:KH.L164.10.v2.A.nonSL3-1
KH2012:KH.L164.10.v2.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000021874
Collections

Gateway full ORF

5 results

cima879309

Plate: VES68_K12

cien118572

Plate: VES88_M19

cien130021

Plate: VES90_E16

cien139231

Plate: VES92_G02

cien161247

Plate: VES95_A06

Gene collection 1 (N. Satoh)

1 result

cieg028m02

Plate: R1CiGC20m17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_C2H2_type SMART Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type

GOSlim

24 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
zinc ion binding Orthology molecular function
nuclear body Blast cellular component
macromolecular complex Orthology cellular component
protein homodimerization activity Blast molecular function
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
metal ion binding Orthology molecular function
protein heterodimerization activity Blast molecular function
protein oligomerization Orthology biological process
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
transcription factor binding Blast molecular function

GO (Orthology)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
zinc ion binding Hs molecular function
protein domain specific binding Hs molecular function
macromolecular complex Hs cellular component
metal ion binding Hs molecular function
protein heterooligomerization Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 129 1.89e-33
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 94.0 1.03e-20
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 129 1.89e-33
nucleic acid binding Hs molecular function 129 1.89e-33
DNA binding Hs molecular function 129 1.89e-33
transcription factor activity, sequence-specific DNA binding Hs molecular function 94.0 1.03e-20
protein binding Hs molecular function 94.0 1.03e-20
nucleus Hs cellular component 129 1.89e-33
nucleoplasm Hs cellular component 94.0 1.03e-20
cytoplasm Hs cellular component 94.0 1.03e-20
zinc ion binding Hs molecular function 129 1.89e-33
nuclear body Hs cellular component 88.6 7.49e-19
protein domain specific binding Hs molecular function 129 1.89e-33
nuclear pericentric heterochromatin Hs cellular component 94.0 1.03e-20
macromolecular complex Hs cellular component 129 1.89e-33
protein homodimerization activity Hs molecular function 88.6 7.49e-19
bHLH transcription factor binding Hs molecular function 88.6 7.49e-19
sequence-specific DNA binding Hs molecular function 88.6 7.49e-19
transcription regulatory region DNA binding Hs molecular function 94.0 1.03e-20
metal ion binding Hs molecular function 129 1.89e-33
protein heterodimerization activity Hs molecular function 88.6 7.49e-19

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 0.011

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