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GENE CARD

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Gene Card

Best human hits

C6; C8B; C9

Unique Gene ID

Cirobu.g00011585

Gene Model ID

KH2012:KH.L154.44

Location

KhL154:304218..309068

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

cima81242

Plate: VES56_N06

cima813045

Plate: VES58_P10

Gene collection 1 (N. Satoh)

1 result

ciad046i20

Plate: R1CiGC05a03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

17 results

IPR Term Analysis Definition
TSP1_rpt_sf SUPERFAMILY Thrombospondin type-1 (TSP1) repeat superfamily
TSP1_rpt_sf Gene3D Thrombospondin type-1 (TSP1) repeat superfamily
LDrepeatLR_classA_rpt ProSiteProfiles Low-density lipoprotein (LDL) receptor class A repeat
TSP1_rpt ProSiteProfiles Thrombospondin type-1 (TSP1) repeat
MACPF SMART Membrane attack complex component/perforin (MACPF) domain
MACPF_CS ProSitePatterns Membrane attack complex component/perforin domain, conserved site
EGF-like_CS ProSitePatterns EGF-like, conserved site
MACPF ProSiteProfiles Membrane attack complex component/perforin (MACPF) domain
LDrepeatLR_classA_rpt Pfam Low-density lipoprotein (LDL) receptor class A repeat
TSP1_rpt Pfam Thrombospondin type-1 (TSP1) repeat
MAC_perforin PRINTS Membrane attack complex component/perforin/complement C9
TSP1_rpt SMART Thrombospondin type-1 (TSP1) repeat
LDrepeatLR_classA_rpt CDD Low-density lipoprotein (LDL) receptor class A repeat
LDL_receptor-like_sf SUPERFAMILY LDL receptor-like superfamily
MACPF Pfam Membrane attack complex component/perforin (MACPF) domain
LDrepeatLR_classA_rpt SMART Low-density lipoprotein (LDL) receptor class A repeat
LDLR_class-A_CS ProSitePatterns Low-density lipoprotein (LDL) receptor class A, conserved site

GOSlim

12 results

GO Term Annotation Origin Type
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
cytosol Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
immune response InterProScan biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
extracellular exosome Blast cellular component
extracellular vesicle Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
protein binding Hs molecular function 268 2.02e-79
extracellular region Hs cellular component 268 2.02e-79
membrane attack complex Hs cellular component 268 2.02e-79
extracellular space Hs cellular component 212 3.11e-61
cytosol Hs cellular component 199 1.47e-56
plasma membrane Hs cellular component 199 1.47e-56
integral component of plasma membrane Hs cellular component 199 1.47e-56
membrane Hs cellular component 212 3.11e-61
integral component of membrane Hs cellular component 199 1.47e-56
other organism cell membrane Hs cellular component 199 1.47e-56
other organism membrane Hs cellular component 199 1.47e-56
extracellular exosome Hs cellular component 268 2.02e-79
blood microparticle Hs cellular component 199 1.47e-56
extracellular vesicle Hs cellular component 212 3.11e-61

GO (InterProScan)

3 results

GO Term Analysis Type e-value
protein binding SMART molecular function 1.4E-12
membrane attack complex PRINTS cellular component 6.0E-22
immune response PRINTS biological process 6.0E-22