Login
Help

GENE CARD

Submit your Data

  1. Gene 'Phmamm.CG.MTP2014.S1...' > 
  2. > 
  3. > 
  4. > 

Gene Card

Best human hits

PITX1; PITX2; PITX3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011526

Gene Model ID

KH2012:KH.L153.79

Location

KhL153:200251..213471

Transcript Models and Sequences

  KH2012:KH.L153.79.v1.A.SL2-1
KH2012:KH.L153.79.v2.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005285
NCBI Reference Sequence XM_009863002.2
Collections

Gene collection 1 (N. Satoh)

1 result

citb12n1

Plate: R1CiGC30b01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

46 results

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Homeobox_dom CDD Homeobox domain
Homeobox_dom SMART Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom Pfam Homeobox domain
OAR_dom ProSiteProfiles OAR domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
OAR_dom Pfam OAR domain
Homeobox_dom ProSiteProfiles Homeobox domain

GOSlim

47 results

GO Term Annotation Origin Type
transcription regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
brain development Orthology biological process
heart development Orthology biological process
transcription factor binding Orthology molecular function
anatomical structure morphogenesis Orthology biological process
regulation of gene expression Orthology biological process
neuron differentiation Orthology biological process
regulation of cell proliferation Orthology biological process
neuronal cell body Orthology cellular component
sequence-specific DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
neuron development Orthology biological process
system development Orthology biological process
angiogenesis Orthology biological process
blood vessel morphogenesis Orthology biological process
cell differentiation Orthology biological process
cell migration Orthology biological process
generation of neurons Orthology biological process
animal organ development Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
anatomical structure formation involved in morphogenesis Orthology biological process
membrane organization Orthology biological process
developmental process Orthology biological process
reproductive process Orthology biological process
response to organic substance Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cell-cell signaling Orthology biological process
positive regulation of apoptotic process Orthology biological process
cell development Orthology biological process

GO (Orthology)

80 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
transcription regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
RNA polymerase II transcription factor binding Hs molecular function
RNA polymerase II activating transcription factor binding Hs molecular function
RNA polymerase II transcription coactivator activity Hs molecular function
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function
skeletal system development Hs biological process
branching involved in blood vessel morphogenesis Hs biological process
vasculogenesis Hs biological process
neuron migration Hs biological process
extraocular skeletal muscle development Hs biological process
lens development in camera-type eye Hs biological process
lens morphogenesis in camera-type eye Hs biological process
atrioventricular valve development Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
determination of left/right symmetry Hs biological process
brain development Hs biological process
heart development Hs biological process
skeletal muscle tissue development Hs biological process
myoblast fusion Hs biological process
aging Hs biological process
locomotory behavior Hs biological process
transcription factor binding Hs molecular function
male gonad development Hs biological process
female gonad development Hs biological process
anatomical structure morphogenesis Hs biological process
response to hormone Hs biological process
animal organ morphogenesis Hs biological process
regulation of gene expression Hs biological process
branchiomeric skeletal muscle development Hs biological process
Wnt signaling pathway Hs biological process
hypothalamus cell migration Hs biological process
pituitary gland development Hs biological process
neuron differentiation Hs biological process
lung development Hs biological process
regulation of cell migration Hs biological process
midbrain development Hs biological process
embryonic camera-type eye development Hs biological process
chromatin DNA binding Hs molecular function
embryonic hindlimb morphogenesis Hs biological process
hair cell differentiation Hs biological process
regulation of cell proliferation Hs biological process
response to cocaine Hs biological process
odontogenesis Hs biological process
camera-type eye development Hs biological process
neuronal cell body Hs cellular component
positive regulation of DNA binding Hs biological process
positive regulation of neuron apoptotic process Hs biological process
sequence-specific DNA binding Hs molecular function
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
embryonic digestive tract morphogenesis Hs biological process
neuron development Hs biological process
cardiac muscle tissue development Hs biological process
negative regulation of neurogenesis Hs biological process
cartilage development Hs biological process
cardiac muscle cell differentiation Hs biological process
ventricular cardiac muscle cell development Hs biological process
digestive system development Hs biological process
endodermal digestive tract morphogenesis Hs biological process
iris morphogenesis Hs biological process
lens fiber cell differentiation Hs biological process
left/right axis specification Hs biological process
dopaminergic neuron differentiation Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription regulatory region sequence-specific DNA binding Hs molecular function 211 9.98e-65
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 211 9.98e-65
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 211 9.98e-65
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 211 9.98e-65
RNA polymerase II transcription factor binding Hs molecular function 188 5.80e-56
RNA polymerase II activating transcription factor binding Hs molecular function 211 9.98e-65
RNA polymerase II transcription coactivator activity Hs molecular function 211 9.98e-65
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function 188 5.80e-56
DNA binding Hs molecular function 211 9.98e-65
chromatin binding Hs molecular function 211 9.98e-65
transcription factor activity, sequence-specific DNA binding Hs molecular function 211 9.98e-65
protein binding Hs molecular function 211 9.98e-65
nucleus Hs cellular component 211 9.98e-65
nucleoplasm Hs cellular component 211 9.98e-65
transcription factor complex Hs cellular component 211 9.98e-65
nucleolus Hs cellular component 188 5.80e-56
cytoplasm Hs cellular component 211 9.98e-65
transcription factor binding Hs molecular function 211 9.98e-65
chromatin DNA binding Hs molecular function 211 9.98e-65
neuronal cell body Hs cellular component 184 1.29e-54
sequence-specific DNA binding Hs molecular function 211 9.98e-65

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 9.2E-26
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

Back to Top