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Gene Card

Best human hits

ZNF208; ZNF729; ZNF850

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011474

Gene Model ID

KH2012:KH.L153.26

Location

KhL153:82570..90214

Transcript Models and Sequences

  KH2012:KH.L153.26.v1.R.SL2-1
KH2012:KH.L153.26.v2.R.ND1-1
KH2012:KH.L153.26.v3.R.ND1-1
KH2012:KH.L153.26.v4.A.ND3-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_009862991.2
Collections

Gateway full ORF

4 results

cien154681

Plate: VES94_D05

cien183555

Plate: VES98_J14

cien190253

Plate: VES99_N18

cien228931

Plate: VES105_D13

Gene collection 1 (N. Satoh)

2 results

cieg015i17

Plate: R1CiGC17j10

cieg078p21

Plate: R1CiGC40i18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type SMART Zinc finger C2H2-type
YY-1-like PIRSF C2H2-type Zinc finger protein, YY-1-like

GOSlim

6 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
zinc ion binding Blast molecular function
metal ion binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

6 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 807 0.0
DNA binding Hs molecular function 807 0.0
intracellular Hs cellular component 807 0.0
nucleus Hs cellular component 807 0.0
zinc ion binding Hs molecular function 807 0.0
metal ion binding Hs molecular function 807 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 4.7E-5

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