Aniseed - Gene card

Gene Card

Best human hits

RPL23A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011437

Gene Model ID

KH2012:KH.L152.7

Location

KhL152:3251..5748

Transcript Models and Sequences

KH2012:KH.L152.7.v1.A.nonSL10-1
KH2012:KH.L152.7.v1.A.nonSL1-1
KH2012:KH.L152.7.v1.A.nonSL11-1
KH2012:KH.L152.7.v1.A.nonSL12-1
KH2012:KH.L152.7.v1.A.nonSL2-1
KH2012:KH.L152.7.v1.A.nonSL3-1
KH2012:KH.L152.7.v1.A.nonSL4-1
KH2012:KH.L152.7.v1.A.nonSL5-1
KH2012:KH.L152.7.v1.A.nonSL6-1
KH2012:KH.L152.7.v1.A.nonSL7-1
KH2012:KH.L152.7.v1.A.nonSL8-1
KH2012:KH.L152.7.v1.A.nonSL9-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000010522
NCBI Reference Sequence	XM_002126221.4

Collections

Gene collection 1 (N. Satoh)

1 result

ciad025n06

Plate: R1CiGC03e12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Ribosomal_L23	TIGRFAM	Ribosomal protein L23
Ribosomal_L23/L25_CS	ProSitePatterns	Ribosomal protein L23/L25, conserved site
Ribosomal_L23/L15e_core_dom_sf	SUPERFAMILY	Ribosomal protein L23/L15e core domain superfamily
Ribosomal_L25/23	Hamap	Ribosomal protein L25/L23
Ribosomal_L23/L25_N	Pfam	Ribosomal protein L23/L25, N-terminal
Ribosomal_L25/23	Pfam	Ribosomal protein L25/L23
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily

GOSlim

19 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
cell proliferation	Orthology	biological process
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cell adhesion molecule binding	Orthology	molecular function

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal large subunit assembly	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
cell proliferation	Hs	biological process
rRNA binding	Hs	molecular function
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
TORC2 complex	Hs	cellular component
cadherin binding	Hs	molecular function
extracellular exosome	Hs	cellular component

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	212	2.82e-71
structural constituent of ribosome	Hs	molecular function	212	2.82e-71
protein binding	Hs	molecular function	212	2.82e-71
intracellular	Hs	cellular component	212	2.82e-71
nucleus	Hs	cellular component	212	2.82e-71
nucleolus	Hs	cellular component	212	2.82e-71
cytoplasm	Hs	cellular component	212	2.82e-71
cytosol	Hs	cellular component	212	2.82e-71
ribosome	Hs	cellular component	212	2.82e-71
rRNA binding	Hs	molecular function	212	2.82e-71
cytosolic large ribosomal subunit	Hs	cellular component	212	2.82e-71
intracellular ribonucleoprotein complex	Hs	cellular component	212	2.82e-71
TORC2 complex	Hs	cellular component	212	2.82e-71
cadherin binding	Hs	molecular function	212	2.82e-71
extracellular exosome	Hs	cellular component	212	2.82e-71

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	TIGRFAM	molecular function	2.9E-31
intracellular	TIGRFAM	cellular component	2.9E-31
ribosome	TIGRFAM	cellular component	2.9E-31
translation	TIGRFAM	biological process	2.9E-31