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GENE CARD

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  1. Clone 'AHC0AAA37YI18' > 
  2. Gene 'KH2012:KH.L144.7'

Gene Card

Best human hits

PATJ; PDZD8; PDZRN4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011277

Gene Model ID

KH2012:KH.L144.7

Location

KhL144:123053..127290

Transcript Models and Sequences

  KH2012:KH.L144.7.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002119596.3
Collections

Gateway full ORF

6 results

cien103180

Plate: VES86_M10

cien32703

Plate: VES75_L13

cien94610

Plate: VES85_C04

cima83017

Plate: VES56_A16

cima822857

Plate: VES60_E10

cima864042

Plate: VES65_D08

Gene collection 1 (N. Satoh)

4 results

ciad001g08

Plate: R1CiGC01c23

cieg042c02

Plate: R1CiGC22c12

ciad060b03

Plate: R1CiGC06m17

ciad010o13

Plate: R1CiGC02g11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
PDZ ProSiteProfiles PDZ domain
PDZ SMART PDZ domain
MMM1_dom Pfam MMM1 domain
PDZ Pfam PDZ domain
PDZ_sf SUPERFAMILY PDZ superfamily

GOSlim

24 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
cytoplasm Blast cellular component
mitochondrion Orthology cellular component
endoplasmic reticulum Orthology cellular component
endoplasmic reticulum membrane Orthology cellular component
centrosome Blast cellular component
microtubule organizing center Blast cellular component
cytosol Blast cellular component
plasma membrane Blast cellular component
membrane Orthology cellular component
integral component of membrane Orthology cellular component
apical plasma membrane Blast cellular component
cell junction Blast cellular component
intracellular signal transduction Orthology biological process
apical part of cell Blast cellular component
metal ion binding Orthology molecular function
perinuclear region of cytoplasm Blast cellular component
extracellular exosome Blast cellular component
organic substance transport Orthology biological process
organelle organization Orthology biological process
binding Orthology molecular function
cell morphogenesis Orthology biological process
organelle part Orthology cellular component
cellular process Orthology biological process

GO (Orthology)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
protein binding Hs molecular function
mitochondrion Hs cellular component
endoplasmic reticulum Hs cellular component
endoplasmic reticulum membrane Hs cellular component
lipid transport Hs biological process
cytoskeleton organization Hs biological process
lipid binding Hs molecular function
membrane Hs cellular component
integral component of membrane Hs cellular component
viral process Hs biological process
regulation of cell morphogenesis Hs biological process
intracellular signal transduction Hs biological process
ER-mitochondrion membrane contact site Hs cellular component
metal ion binding Hs molecular function
mitochondrial calcium ion homeostasis Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protein binding Hs molecular function 200 2.45e-53
cytoplasm Hs cellular component 40.0 0.006
mitochondrion Hs cellular component 200 2.45e-53
endoplasmic reticulum Hs cellular component 200 2.45e-53
endoplasmic reticulum membrane Hs cellular component 200 2.45e-53
centrosome Hs cellular component 40.0 0.006
microtubule organizing center Hs cellular component 40.0 0.006
cytosol Hs cellular component 40.0 0.006
plasma membrane Hs cellular component 40.0 0.006
bicellular tight junction Hs cellular component 40.0 0.006
lipid binding Hs molecular function 200 2.45e-53
membrane Hs cellular component 200 2.45e-53
integral component of membrane Hs cellular component 200 2.45e-53
apical plasma membrane Hs cellular component 40.0 0.006
cell junction Hs cellular component 40.0 0.006
ER-mitochondrion membrane contact site Hs cellular component 200 2.45e-53
apical part of cell Hs cellular component 40.0 0.006
metal ion binding Hs molecular function 200 2.45e-53
perinuclear region of cytoplasm Hs cellular component 40.0 0.006
extracellular exosome Hs cellular component 40.0 0.006

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 5.52E-7

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