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GENE CARD

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Gene Card

Best human hits

CHD4; PHF21A; PHF21B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011272

Gene Model ID

KH2012:KH.L144.2

Location

KhL144:105326..115587

Transcript Models and Sequences

  KH2012:KH.L144.2.v1.A.SL2-2
KH2012:KH.L144.2.v2.A.SL2-1
KH2012:KH.L144.2.v3.A.SL1-2
KH2012:KH.L144.2.v4.A.SL1-1
KH2012:KH.L144.2.v5.A.SL3-2
KH2012:KH.L144.2.v5.A.SL5-2
KH2012:KH.L144.2.v6.A.SL4-1
KH2012:KH.L144.2.v7.A.SL3-1
KH2012:KH.L144.2.v7.A.SL5-1
KH2012:KH.L144.2.v8.A.SL4-2

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000002652
ENSEMBL ENSCING00000024242
NCBI Reference Sequence XM_009862928.2
NCBI Reference Sequence XM_009862929.2
Collections

Gateway full ORF

4 results

cien108317

Plate: VES87_I06

cien42788

Plate: VES77_N02

cima891446

Plate: VES70_I22

cien161553

Plate: VES95_E06

Gene collection 1 (N. Satoh)

2 results

ciad020a06

Plate: R1CiGC03k03

cieg057c18

Plate: R1CiGC24p09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Znf_PHD-finger ProSiteProfiles Zinc finger, PHD-finger
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
Znf_FYVE_PHD SUPERFAMILY Zinc finger, FYVE/PHD-type
Znf_PHD SMART Zinc finger, PHD-type
Zinc_finger_PHD-type_CS ProSitePatterns Zinc finger, PHD-type, conserved site
Znf_PHD-finger Pfam Zinc finger, PHD-finger

GOSlim

28 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription cofactor activity Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
centrosome Blast cellular component
microtubule organizing center Blast cellular component
cytoskeleton Blast cellular component
transcription factor binding Blast molecular function
zinc ion binding Blast molecular function
membrane Blast cellular component
hydrolase activity Blast molecular function
macromolecular complex Blast cellular component
metal ion binding Blast molecular function
nucleoplasm part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
organelle organization Blast biological process
nucleoside-triphosphatase activity Blast molecular function
cellular protein modification process Blast biological process
macromolecular complex binding Blast molecular function
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
histone deacetylase complex Hs cellular component 106 6.76e-24
nucleotide binding Hs molecular function 59.7 5.80e-09
nuclear chromatin Hs cellular component 59.7 5.80e-09
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 106 6.76e-24
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 59.7 5.80e-09
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 59.7 5.80e-09
RNA polymerase II repressing transcription factor binding Hs molecular function 59.7 5.80e-09
DNA binding Hs molecular function 106 6.76e-24
chromatin binding Hs molecular function 106 6.76e-24
transcription cofactor activity Hs molecular function 106 6.76e-24
ATP-dependent DNA helicase activity Hs molecular function 59.7 5.80e-09
helicase activity Hs molecular function 59.7 5.80e-09
histone deacetylase activity Hs molecular function 106 6.76e-24
protein binding Hs molecular function 106 6.76e-24
ATP binding Hs molecular function 59.7 5.80e-09
nucleus Hs cellular component 106 6.76e-24
nucleoplasm Hs cellular component 106 6.76e-24
cytoplasm Hs cellular component 59.7 5.80e-09
centrosome Hs cellular component 59.7 5.80e-09
microtubule organizing center Hs cellular component 59.7 5.80e-09
cytoskeleton Hs cellular component 59.7 5.80e-09
transcription factor binding Hs molecular function 59.7 5.80e-09
zinc ion binding Hs molecular function 59.7 5.80e-09
membrane Hs cellular component 59.7 5.80e-09
NuRD complex Hs cellular component 59.7 5.80e-09
hydrolase activity Hs molecular function 59.7 5.80e-09
nucleosomal DNA binding Hs molecular function 59.7 5.80e-09
macromolecular complex Hs cellular component 59.7 5.80e-09
protein-DNA complex Hs cellular component 59.7 5.80e-09
histone binding Hs molecular function 106 6.76e-24
histone deacetylase binding Hs molecular function 59.7 5.80e-09
metal ion binding Hs molecular function 106 6.76e-24
DNA repair complex Hs cellular component 106 6.76e-24

GO (InterProScan)

No result

GO Term Analysis Type e-value

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